Results 61 - 80 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5506 | 3' | -55 | NC_001798.1 | + | 26904 | 0.69 | 0.856952 |
Target: 5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3' miRNA: 3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 26978 | 0.69 | 0.856952 |
Target: 5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3' miRNA: 3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 4101 | 0.69 | 0.856952 |
Target: 5'- cGggGCGGGcucGGCCcUGGGCGggcucggccGGGGCg -3' miRNA: 3'- cCuuUGCCCa--UUGGaGCCCGC---------UCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 26874 | 0.69 | 0.856952 |
Target: 5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3' miRNA: 3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 59659 | 0.69 | 0.856952 |
Target: 5'- cGGAGAgGGGggGCgaCUCGGcucgcGUGGGGGCg -3' miRNA: 3'- -CCUUUgCCCauUG--GAGCC-----CGCUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 26814 | 0.69 | 0.856952 |
Target: 5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3' miRNA: 3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 65601 | 0.69 | 0.856952 |
Target: 5'- ----cUGGGccuCCUCGccGGCGAGGACg -3' miRNA: 3'- ccuuuGCCCauuGGAGC--CCGCUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 26948 | 0.69 | 0.856952 |
Target: 5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3' miRNA: 3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 86450 | 0.69 | 0.860018 |
Target: 5'- cGGGGACGGGgGccgguucgugagccuGCUUCGGGcCGcGGGCc -3' miRNA: 3'- -CCUUUGCCCaU---------------UGGAGCCC-GCuCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 143657 | 0.68 | 0.864555 |
Target: 5'- cGGGuuuCGaGGUAGCgaUUCGcGGCGAGGAa -3' miRNA: 3'- -CCUuu-GC-CCAUUG--GAGC-CCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 48680 | 0.68 | 0.864555 |
Target: 5'- gGGGGACGGGccGCC-CGGaGCGGuGGGg -3' miRNA: 3'- -CCUUUGCCCauUGGaGCC-CGCU-CCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 112441 | 0.68 | 0.864555 |
Target: 5'- cGAGccACGGGgcgGACUUgGGGgGGGGAa -3' miRNA: 3'- cCUU--UGCCCa--UUGGAgCCCgCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 105588 | 0.68 | 0.864555 |
Target: 5'- aGGGuaguACGGGUccauguucgagGGCggCGGGCGGGcGACg -3' miRNA: 3'- -CCUu---UGCCCA-----------UUGgaGCCCGCUC-CUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 135249 | 0.68 | 0.87195 |
Target: 5'- cGGggGCGGGcgGGCCUgGaaaGGCu-GGACg -3' miRNA: 3'- -CCuuUGCCCa-UUGGAgC---CCGcuCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 150169 | 0.68 | 0.879133 |
Target: 5'- cGGggGCGGGccGCCgcccccucCGcGGCGuggGGGGCg -3' miRNA: 3'- -CCuuUGCCCauUGGa-------GC-CCGC---UCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 83636 | 0.68 | 0.879133 |
Target: 5'- cGGAGGCGGGagcggaggggaUGugCggcucgCGGGCGucuGGGAUg -3' miRNA: 3'- -CCUUUGCCC-----------AUugGa-----GCCCGC---UCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 100739 | 0.68 | 0.879133 |
Target: 5'- aGGGGAUGGGgGACUUgGGGCGcgcGGuCg -3' miRNA: 3'- -CCUUUGCCCaUUGGAgCCCGCu--CCuG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 33486 | 0.68 | 0.879133 |
Target: 5'- aGAGAgGGGggAAagUgGGGCGGGGGCg -3' miRNA: 3'- cCUUUgCCCa-UUggAgCCCGCUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 36309 | 0.68 | 0.886097 |
Target: 5'- uGGcgGCGGGgcgcgGGCCg-GGGCcGGGGCu -3' miRNA: 3'- -CCuuUGCCCa----UUGGagCCCGcUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 31227 | 0.68 | 0.886097 |
Target: 5'- cGGAgcagcagcAGCGGcGgcGCCccguugCGGGCGGGGGu -3' miRNA: 3'- -CCU--------UUGCC-CauUGGa-----GCCCGCUCCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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