miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 3' -55 NC_001798.1 + 10589 0.66 0.943056
Target:  5'- gGGGAACGGGggacugUAugCUauGGCGAgcgguuccgGGGCg -3'
miRNA:   3'- -CCUUUGCCC------AUugGAgcCCGCU---------CCUG- -5'
5506 3' -55 NC_001798.1 + 11228 0.65 0.955576
Target:  5'- ----uUGGGggGCCgUCGGGCcacugcggggccGAGGACu -3'
miRNA:   3'- ccuuuGCCCauUGG-AGCCCG------------CUCCUG- -5'
5506 3' -55 NC_001798.1 + 11605 0.7 0.789464
Target:  5'- uGGAAuuggGCGGGgcuaucucGCCgcucgCGGGCGcGGGCg -3'
miRNA:   3'- -CCUU----UGCCCau------UGGa----GCCCGCuCCUG- -5'
5506 3' -55 NC_001798.1 + 11659 0.78 0.377205
Target:  5'- cGGggGCGGGggucgGGUCUCgGGGgGAGGACg -3'
miRNA:   3'- -CCuuUGCCCa----UUGGAG-CCCgCUCCUG- -5'
5506 3' -55 NC_001798.1 + 12340 0.66 0.953237
Target:  5'- gGGAucgGACGGGUcgagguGGCUgUGGGCGcgguggcuaaucgucGGGACa -3'
miRNA:   3'- -CCU---UUGCCCA------UUGGaGCCCGC---------------UCCUG- -5'
5506 3' -55 NC_001798.1 + 14503 0.71 0.722932
Target:  5'- cGGGGAccCGGGUGACUUCGucUGGGGGCc -3'
miRNA:   3'- -CCUUU--GCCCAUUGGAGCccGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 14979 0.67 0.911692
Target:  5'- --uAGCGGG--AgCUUGGGCGGGGGg -3'
miRNA:   3'- ccuUUGCCCauUgGAGCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 15459 0.66 0.947459
Target:  5'- gGGggGucgcgUGGGUAGacgUGGGCGGGGGg -3'
miRNA:   3'- -CCuuU-----GCCCAUUggaGCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 16950 0.68 0.899353
Target:  5'- gGGGAGCGGGgucaCUUGGGUGAaauaGcGGCa -3'
miRNA:   3'- -CCUUUGCCCauugGAGCCCGCU----C-CUG- -5'
5506 3' -55 NC_001798.1 + 19995 0.67 0.928438
Target:  5'- cGGAuucCGGGUucucccGGCCggcCGGG-GAGGGCc -3'
miRNA:   3'- -CCUuu-GCCCA------UUGGa--GCCCgCUCCUG- -5'
5506 3' -55 NC_001798.1 + 21820 0.7 0.81605
Target:  5'- cGGAGcccGCGGGaugacgcgGGCCcCGGGC-AGGGCg -3'
miRNA:   3'- -CCUU---UGCCCa-------UUGGaGCCCGcUCCUG- -5'
5506 3' -55 NC_001798.1 + 21959 0.69 0.824593
Target:  5'- cGGAGcGCGGGaugacgcgGGCCcCGGGC-AGGGCg -3'
miRNA:   3'- -CCUU-UGCCCa-------UUGGaGCCCGcUCCUG- -5'
5506 3' -55 NC_001798.1 + 22109 0.67 0.916939
Target:  5'- cGGAccAACGGGgcGACCUCgccggccccuuugGGGCcggcGGGGGCc -3'
miRNA:   3'- -CCU--UUGCCCa-UUGGAG-------------CCCG----CUCCUG- -5'
5506 3' -55 NC_001798.1 + 22887 0.7 0.780309
Target:  5'- cGGGuuCGGGUGGCacggUGGGCcgGAGGAg -3'
miRNA:   3'- -CCUuuGCCCAUUGga--GCCCG--CUCCUg -5'
5506 3' -55 NC_001798.1 + 23551 0.74 0.6017
Target:  5'- aGGAGGCGGGgguGCCcgcgaGGGCcccGGGGGCg -3'
miRNA:   3'- -CCUUUGCCCau-UGGag---CCCG---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 23899 0.7 0.799371
Target:  5'- aGGAGGCGcGGgcccgguucgaGGCCUCGGGCGccccggcgcccguguGGGCg -3'
miRNA:   3'- -CCUUUGC-CCa----------UUGGAGCCCGCu--------------CCUG- -5'
5506 3' -55 NC_001798.1 + 25544 0.74 0.597639
Target:  5'- cGGAGgacgugcGCGuGGUGAuCCUcuacucgccgcugcCGGGCGAGGACc -3'
miRNA:   3'- -CCUU-------UGC-CCAUU-GGA--------------GCCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 26194 0.75 0.541413
Target:  5'- uGGAcggcCGGGccgccGCCUCGGGCGcGGGCg -3'
miRNA:   3'- -CCUuu--GCCCau---UGGAGCCCGCuCCUG- -5'
5506 3' -55 NC_001798.1 + 26506 0.73 0.632234
Target:  5'- cGGGGACGGuGcUGGCCgcggCGGGCGGcGGCg -3'
miRNA:   3'- -CCUUUGCC-C-AUUGGa---GCCCGCUcCUG- -5'
5506 3' -55 NC_001798.1 + 26814 0.69 0.856952
Target:  5'- cGGGcgGGCGGGgg-UCgggCGGGCGGGGGu -3'
miRNA:   3'- -CCU--UUGCCCauuGGa--GCCCGCUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.