miRNA display CGI


Results 21 - 40 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 3' -55 NC_001798.1 + 122114 0.77 0.440805
Target:  5'- gGGggGCgcuuugccagccgggGGGgcccccgGGCCgCGGGCGAGGACg -3'
miRNA:   3'- -CCuuUG---------------CCCa------UUGGaGCCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 122050 0.67 0.905639
Target:  5'- --cAGCGGGggAGCCcUGGGCGcgucGGACg -3'
miRNA:   3'- ccuUUGCCCa-UUGGaGCCCGCu---CCUG- -5'
5506 3' -55 NC_001798.1 + 117348 0.69 0.856952
Target:  5'- cGGAAACGuGG--ACCU-GGGUGuGGGCu -3'
miRNA:   3'- -CCUUUGC-CCauUGGAgCCCGCuCCUG- -5'
5506 3' -55 NC_001798.1 + 114991 0.67 0.91751
Target:  5'- -uGAACGGGgccAACCUCGucacggcgcuGGUGAuGGGCa -3'
miRNA:   3'- ccUUUGCCCa--UUGGAGC----------CCGCU-CCUG- -5'
5506 3' -55 NC_001798.1 + 113337 0.68 0.899353
Target:  5'- ---uACGGGUgGACCggaCGGGCGGuGGCg -3'
miRNA:   3'- ccuuUGCCCA-UUGGa--GCCCGCUcCUG- -5'
5506 3' -55 NC_001798.1 + 112441 0.68 0.864555
Target:  5'- cGAGccACGGGgcgGACUUgGGGgGGGGAa -3'
miRNA:   3'- cCUU--UGCCCa--UUGGAgCCCgCUCCUg -5'
5506 3' -55 NC_001798.1 + 111892 0.67 0.923093
Target:  5'- cGGGAGcCGGGggaggugcGCCU-GGGCcAGGGCg -3'
miRNA:   3'- -CCUUU-GCCCau------UGGAgCCCGcUCCUG- -5'
5506 3' -55 NC_001798.1 + 105588 0.68 0.864555
Target:  5'- aGGGuaguACGGGUccauguucgagGGCggCGGGCGGGcGACg -3'
miRNA:   3'- -CCUu---UGCCCA-----------UUGgaGCCCGCUC-CUG- -5'
5506 3' -55 NC_001798.1 + 105191 0.66 0.947459
Target:  5'- cGGcgGCGGGgc-CCgcggUGGGCGAcGGCg -3'
miRNA:   3'- -CCuuUGCCCauuGGa---GCCCGCUcCUG- -5'
5506 3' -55 NC_001798.1 + 104819 0.66 0.938419
Target:  5'- cGGGAGCGcGaucGCgaUCGGGgGAGGACu -3'
miRNA:   3'- -CCUUUGCcCau-UGg-AGCCCgCUCCUG- -5'
5506 3' -55 NC_001798.1 + 103648 0.66 0.951632
Target:  5'- gGGggGgGGGUGGaagCGGGCaAGGGa -3'
miRNA:   3'- -CCuuUgCCCAUUggaGCCCGcUCCUg -5'
5506 3' -55 NC_001798.1 + 102762 0.7 0.807343
Target:  5'- cGgcGCGGG-AACgCUCGcGGCGGGGGa -3'
miRNA:   3'- cCuuUGCCCaUUG-GAGC-CCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 102483 0.69 0.841149
Target:  5'- aGGAGGCGGGUAGug-CGGG-GAcGGGCc -3'
miRNA:   3'- -CCUUUGCCCAUUggaGCCCgCU-CCUG- -5'
5506 3' -55 NC_001798.1 + 102025 0.66 0.951632
Target:  5'- gGGuAGCGGGgugg-UUGGGCGGGGGu -3'
miRNA:   3'- -CCuUUGCCCauuggAGCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 101909 0.66 0.943056
Target:  5'- gGGGAGCGGG--ACCggGGGUaaccgcaacugGGGGAUa -3'
miRNA:   3'- -CCUUUGCCCauUGGagCCCG-----------CUCCUG- -5'
5506 3' -55 NC_001798.1 + 101868 0.77 0.428305
Target:  5'- cGGAGGgGGGUGGgCgugugCGGGgGAGGGCu -3'
miRNA:   3'- -CCUUUgCCCAUUgGa----GCCCgCUCCUG- -5'
5506 3' -55 NC_001798.1 + 101819 0.72 0.672904
Target:  5'- cGGGuugGGGUAAgCUCGcGGCGGGGGg -3'
miRNA:   3'- -CCUuugCCCAUUgGAGC-CCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 100791 0.72 0.70309
Target:  5'- gGGggGCGGGUGucgGCCgucUCGGGCGuGucCu -3'
miRNA:   3'- -CCuuUGCCCAU---UGG---AGCCCGCuCcuG- -5'
5506 3' -55 NC_001798.1 + 100739 0.68 0.879133
Target:  5'- aGGGGAUGGGgGACUUgGGGCGcgcGGuCg -3'
miRNA:   3'- -CCUUUGCCCaUUGGAgCCCGCu--CCuG- -5'
5506 3' -55 NC_001798.1 + 98566 0.65 0.955576
Target:  5'- uGGggGCGcuGGUGGCCgCGguGGCGucGGCg -3'
miRNA:   3'- -CCuuUGC--CCAUUGGaGC--CCGCucCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.