miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 3' -55 NC_001798.1 + 154405 0.66 0.947459
Target:  5'- -aAGGCGGGcGGCggcggCGGGCGGGcGGCa -3'
miRNA:   3'- ccUUUGCCCaUUGga---GCCCGCUC-CUG- -5'
5506 3' -55 NC_001798.1 + 154375 0.68 0.899353
Target:  5'- cGggGgGGGUGuuUUUUGGGgGGGGGCg -3'
miRNA:   3'- cCuuUgCCCAUu-GGAGCCCgCUCCUG- -5'
5506 3' -55 NC_001798.1 + 154125 0.66 0.947459
Target:  5'- cGGcgGCGGG-GACCcCGgcGGCG-GGACa -3'
miRNA:   3'- -CCuuUGCCCaUUGGaGC--CCGCuCCUG- -5'
5506 3' -55 NC_001798.1 + 153649 0.7 0.815187
Target:  5'- gGGAGGCGuaccuucccgcgcGGcgcguCCgCGGGCGGGGACg -3'
miRNA:   3'- -CCUUUGC-------------CCauu--GGaGCCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 153318 0.66 0.951632
Target:  5'- cGGGcuCGGGcccgagcucgGGCCUCGGGCuccAGGcACg -3'
miRNA:   3'- -CCUuuGCCCa---------UUGGAGCCCGc--UCC-UG- -5'
5506 3' -55 NC_001798.1 + 151175 0.67 0.905639
Target:  5'- gGGGggUGGGcGACa--GGGCGcGGACc -3'
miRNA:   3'- -CCUuuGCCCaUUGgagCCCGCuCCUG- -5'
5506 3' -55 NC_001798.1 + 150169 0.68 0.879133
Target:  5'- cGGggGCGGGccGCCgcccccucCGcGGCGuggGGGGCg -3'
miRNA:   3'- -CCuuUGCCCauUGGa-------GC-CCGC---UCCUG- -5'
5506 3' -55 NC_001798.1 + 149395 0.7 0.81605
Target:  5'- cGAcGCGGGggGCgUCGGGUagucgGGGGGCc -3'
miRNA:   3'- cCUuUGCCCauUGgAGCCCG-----CUCCUG- -5'
5506 3' -55 NC_001798.1 + 148410 0.66 0.951632
Target:  5'- -cGGGCGGGgugggcGCCg-GGGCGGGGGu -3'
miRNA:   3'- ccUUUGCCCau----UGGagCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 148078 0.69 0.832961
Target:  5'- aGGAAACGGG---CCggGGGCcGGGGCc -3'
miRNA:   3'- -CCUUUGCCCauuGGagCCCGcUCCUG- -5'
5506 3' -55 NC_001798.1 + 147157 0.68 0.892838
Target:  5'- cGGggGuccCGGGUAGCCgcccggcgcCGGGCGGaaGGCg -3'
miRNA:   3'- -CCuuU---GCCCAUUGGa--------GCCCGCUc-CUG- -5'
5506 3' -55 NC_001798.1 + 146414 0.66 0.933547
Target:  5'- gGGGGACGGGgcgAGCC--GGGCaGAGuGCg -3'
miRNA:   3'- -CCUUUGCCCa--UUGGagCCCG-CUCcUG- -5'
5506 3' -55 NC_001798.1 + 146077 0.68 0.886097
Target:  5'- gGGGGAgGGGU--CCg-GGGCGAGG-Cg -3'
miRNA:   3'- -CCUUUgCCCAuuGGagCCCGCUCCuG- -5'
5506 3' -55 NC_001798.1 + 144546 0.71 0.761614
Target:  5'- gGGAGACccgccgugGGGggGCgUUcgaaaGGGCGAGGACg -3'
miRNA:   3'- -CCUUUG--------CCCauUGgAG-----CCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 143657 0.68 0.864555
Target:  5'- cGGGuuuCGaGGUAGCgaUUCGcGGCGAGGAa -3'
miRNA:   3'- -CCUuu-GC-CCAUUG--GAGC-CCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 135249 0.68 0.87195
Target:  5'- cGGggGCGGGcgGGCCUgGaaaGGCu-GGACg -3'
miRNA:   3'- -CCuuUGCCCa-UUGGAgC---CCGcuCCUG- -5'
5506 3' -55 NC_001798.1 + 132148 0.66 0.933547
Target:  5'- ----cCGGG-GGCCggCGGGCG-GGGCg -3'
miRNA:   3'- ccuuuGCCCaUUGGa-GCCCGCuCCUG- -5'
5506 3' -55 NC_001798.1 + 130529 0.67 0.928438
Target:  5'- cGGugGCGGcGaUGGCCcCGaGGUGGGGGCc -3'
miRNA:   3'- -CCuuUGCC-C-AUUGGaGC-CCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 125683 0.67 0.916366
Target:  5'- gGGggGuCGGGgcgaaggaguccGACgUCGGGCGcgcgcgGGGGCg -3'
miRNA:   3'- -CCuuU-GCCCa-----------UUGgAGCCCGC------UCCUG- -5'
5506 3' -55 NC_001798.1 + 122350 0.66 0.947459
Target:  5'- cGAGAauucGGUGGCgUgGGGCGGGcGACg -3'
miRNA:   3'- cCUUUgc--CCAUUGgAgCCCGCUC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.