miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 3' -55 NC_001798.1 + 85828 0.79 0.345496
Target:  5'- gGGggGCGGGgg----CGGGCGGGGGCu -3'
miRNA:   3'- -CCuuUGCCCauuggaGCCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 11659 0.78 0.377205
Target:  5'- cGGggGCGGGggucgGGUCUCgGGGgGAGGACg -3'
miRNA:   3'- -CCuuUGCCCa----UUGGAG-CCCgCUCCUG- -5'
5506 3' -55 NC_001798.1 + 44279 0.77 0.428305
Target:  5'- gGGggGCGGuGcugccgcuGCCgaugCGGGCGGGGGCg -3'
miRNA:   3'- -CCuuUGCC-Cau------UGGa---GCCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 101868 0.77 0.428305
Target:  5'- cGGAGGgGGGUGGgCgugugCGGGgGAGGGCu -3'
miRNA:   3'- -CCUUUgCCCAUUgGa----GCCCgCUCCUG- -5'
5506 3' -55 NC_001798.1 + 122114 0.77 0.440805
Target:  5'- gGGggGCgcuuugccagccgggGGGgcccccgGGCCgCGGGCGAGGACg -3'
miRNA:   3'- -CCuuUG---------------CCCa------UUGGaGCCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 34088 0.76 0.464556
Target:  5'- uGGggGgGGGUGACCggCGcGUGGGGGCg -3'
miRNA:   3'- -CCuuUgCCCAUUGGa-GCcCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 30953 0.76 0.473868
Target:  5'- gGGggGCGGGcgGGggUCGGGCGGGGGu -3'
miRNA:   3'- -CCuuUGCCCa-UUggAGCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 26194 0.75 0.541413
Target:  5'- uGGAcggcCGGGccgccGCCUCGGGCGcGGGCg -3'
miRNA:   3'- -CCUuu--GCCCau---UGGAGCCCGCuCCUG- -5'
5506 3' -55 NC_001798.1 + 6252 0.75 0.541413
Target:  5'- gGGGGACGGGgggacgGGCCggggggaCGGGCcggGGGGACg -3'
miRNA:   3'- -CCUUUGCCCa-----UUGGa------GCCCG---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 25544 0.74 0.597639
Target:  5'- cGGAGgacgugcGCGuGGUGAuCCUcuacucgccgcugcCGGGCGAGGACc -3'
miRNA:   3'- -CCUU-------UGC-CCAUU-GGA--------------GCCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 36501 0.74 0.6017
Target:  5'- cGAcGCGGGcGGCC--GGGCGGGGGCg -3'
miRNA:   3'- cCUuUGCCCaUUGGagCCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 23551 0.74 0.6017
Target:  5'- aGGAGGCGGGgguGCCcgcgaGGGCcccGGGGGCg -3'
miRNA:   3'- -CCUUUGCCCau-UGGag---CCCG---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 34835 0.73 0.622046
Target:  5'- cGGggGCccGGGccgGACCgcCGGGCGgGGGACg -3'
miRNA:   3'- -CCuuUG--CCCa--UUGGa-GCCCGC-UCCUG- -5'
5506 3' -55 NC_001798.1 + 74941 0.73 0.622046
Target:  5'- uGGAccccaccguccAGCGuGGaggaucUGACCUCGGGCGAGaGGCc -3'
miRNA:   3'- -CCU-----------UUGC-CC------AUUGGAGCCCGCUC-CUG- -5'
5506 3' -55 NC_001798.1 + 26506 0.73 0.632234
Target:  5'- cGGGGACGGuGcUGGCCgcggCGGGCGGcGGCg -3'
miRNA:   3'- -CCUUUGCC-C-AUUGGa---GCCCGCUcCUG- -5'
5506 3' -55 NC_001798.1 + 101819 0.72 0.672904
Target:  5'- cGGGuugGGGUAAgCUCGcGGCGGGGGg -3'
miRNA:   3'- -CCUuugCCCAUUgGAGC-CCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 100791 0.72 0.70309
Target:  5'- gGGggGCGGGUGucgGCCgucUCGGGCGuGucCu -3'
miRNA:   3'- -CCuuUGCCCAU---UGG---AGCCCGCuCcuG- -5'
5506 3' -55 NC_001798.1 + 3210 0.72 0.713045
Target:  5'- cGGAGGCGGGcgcGGCgCUCaGGCGccccAGGGCg -3'
miRNA:   3'- -CCUUUGCCCa--UUG-GAGcCCGC----UCCUG- -5'
5506 3' -55 NC_001798.1 + 14503 0.71 0.722932
Target:  5'- cGGGGAccCGGGUGACUUCGucUGGGGGCc -3'
miRNA:   3'- -CCUUU--GCCCAUUGGAGCccGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 30488 0.71 0.732741
Target:  5'- gGGAuccuGugGGGgugGGCCcgUGGGUGAGGAg -3'
miRNA:   3'- -CCU----UugCCCa--UUGGa-GCCCGCUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.