Results 1 - 20 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5506 | 3' | -55 | NC_001798.1 | + | 148410 | 0.66 | 0.951632 |
Target: 5'- -cGGGCGGGgugggcGCCg-GGGCGGGGGu -3' miRNA: 3'- ccUUUGCCCau----UGGagCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 85828 | 0.79 | 0.345496 |
Target: 5'- gGGggGCGGGgg----CGGGCGGGGGCu -3' miRNA: 3'- -CCuuUGCCCauuggaGCCCGCUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 122350 | 0.66 | 0.947459 |
Target: 5'- cGAGAauucGGUGGCgUgGGGCGGGcGACg -3' miRNA: 3'- cCUUUgc--CCAUUGgAgCCCGCUC-CUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 154125 | 0.66 | 0.947459 |
Target: 5'- cGGcgGCGGG-GACCcCGgcGGCG-GGACa -3' miRNA: 3'- -CCuuUGCCCaUUGGaGC--CCGCuCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 154405 | 0.66 | 0.947459 |
Target: 5'- -aAGGCGGGcGGCggcggCGGGCGGGcGGCa -3' miRNA: 3'- ccUUUGCCCaUUGga---GCCCGCUC-CUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 15459 | 0.66 | 0.947459 |
Target: 5'- gGGggGucgcgUGGGUAGacgUGGGCGGGGGg -3' miRNA: 3'- -CCuuU-----GCCCAUUggaGCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 8544 | 0.66 | 0.951632 |
Target: 5'- cGGAcgUGGGUcgcGGCgagGGGUGGGGGCg -3' miRNA: 3'- -CCUuuGCCCA---UUGgagCCCGCUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 66697 | 0.66 | 0.951632 |
Target: 5'- gGGGGACuGGGUAGCCg-GGGUccguucccacaGuGGGCu -3' miRNA: 3'- -CCUUUG-CCCAUUGGagCCCG-----------CuCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 81269 | 0.66 | 0.951632 |
Target: 5'- ---cGCGGG--ACCUugCGGGgGGGGAUg -3' miRNA: 3'- ccuuUGCCCauUGGA--GCCCgCUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 102025 | 0.66 | 0.951632 |
Target: 5'- gGGuAGCGGGgugg-UUGGGCGGGGGu -3' miRNA: 3'- -CCuUUGCCCauuggAGCCCGCUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 103648 | 0.66 | 0.951632 |
Target: 5'- gGGggGgGGGUGGaagCGGGCaAGGGa -3' miRNA: 3'- -CCuuUgCCCAUUggaGCCCGcUCCUg -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 98566 | 0.65 | 0.955576 |
Target: 5'- uGGggGCGcuGGUGGCCgCGguGGCGucGGCg -3' miRNA: 3'- -CCuuUGC--CCAUUGGaGC--CCGCucCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 153318 | 0.66 | 0.951632 |
Target: 5'- cGGGcuCGGGcccgagcucgGGCCUCGGGCuccAGGcACg -3' miRNA: 3'- -CCUuuGCCCa---------UUGGAGCCCGc--UCC-UG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 12340 | 0.66 | 0.953237 |
Target: 5'- gGGAucgGACGGGUcgagguGGCUgUGGGCGcgguggcuaaucgucGGGACa -3' miRNA: 3'- -CCU---UUGCCCA------UUGGaGCCCGC---------------UCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 11228 | 0.65 | 0.955576 |
Target: 5'- ----uUGGGggGCCgUCGGGCcacugcggggccGAGGACu -3' miRNA: 3'- ccuuuGCCCauUGG-AGCCCG------------CUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 6417 | 0.65 | 0.955576 |
Target: 5'- gGGGGACGGGggGACgggGGGacggGGGGACg -3' miRNA: 3'- -CCUUUGCCCa-UUGgagCCCg---CUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 6449 | 0.65 | 0.955576 |
Target: 5'- gGGGGACGGGggGACgggGGGacggGGGGACg -3' miRNA: 3'- -CCUUUGCCCa-UUGgagCCCg---CUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 6481 | 0.65 | 0.955576 |
Target: 5'- gGGGGACGGGggGACgggGGGacggGGGGACg -3' miRNA: 3'- -CCUUUGCCCa-UUGgagCCCg---CUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 36093 | 0.65 | 0.955576 |
Target: 5'- uGGGugGGCGGGUGG---UGGGgGGGGGCc -3' miRNA: 3'- -CCU--UUGCCCAUUggaGCCCgCUCCUG- -5' |
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5506 | 3' | -55 | NC_001798.1 | + | 36431 | 0.65 | 0.955576 |
Target: 5'- uGggGCGGGgucGGggUCGcGGCGGGGAa -3' miRNA: 3'- cCuuUGCCCa--UUggAGC-CCGCUCCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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