miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 3' -55 NC_001798.1 + 98566 0.65 0.955576
Target:  5'- uGGggGCGcuGGUGGCCgCGguGGCGucGGCg -3'
miRNA:   3'- -CCuuUGC--CCAUUGGaGC--CCGCucCUG- -5'
5506 3' -55 NC_001798.1 + 11228 0.65 0.955576
Target:  5'- ----uUGGGggGCCgUCGGGCcacugcggggccGAGGACu -3'
miRNA:   3'- ccuuuGCCCauUGG-AGCCCG------------CUCCUG- -5'
5506 3' -55 NC_001798.1 + 6417 0.65 0.955576
Target:  5'- gGGGGACGGGggGACgggGGGacggGGGGACg -3'
miRNA:   3'- -CCUUUGCCCa-UUGgagCCCg---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 6449 0.65 0.955576
Target:  5'- gGGGGACGGGggGACgggGGGacggGGGGACg -3'
miRNA:   3'- -CCUUUGCCCa-UUGgagCCCg---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 6481 0.65 0.955576
Target:  5'- gGGGGACGGGggGACgggGGGacggGGGGACg -3'
miRNA:   3'- -CCUUUGCCCa-UUGgagCCCg---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 36093 0.65 0.955576
Target:  5'- uGGGugGGCGGGUGG---UGGGgGGGGGCc -3'
miRNA:   3'- -CCU--UUGCCCAUUggaGCCCgCUCCUG- -5'
5506 3' -55 NC_001798.1 + 36431 0.65 0.955576
Target:  5'- uGggGCGGGgucGGggUCGcGGCGGGGAa -3'
miRNA:   3'- cCuuUGCCCa--UUggAGC-CCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 56401 0.65 0.955576
Target:  5'- -cGGugGGGU--CC-CGcGGCGGGGGCu -3'
miRNA:   3'- ccUUugCCCAuuGGaGC-CCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 122350 0.66 0.947459
Target:  5'- cGAGAauucGGUGGCgUgGGGCGGGcGACg -3'
miRNA:   3'- cCUUUgc--CCAUUGgAgCCCGCUC-CUG- -5'
5506 3' -55 NC_001798.1 + 154125 0.66 0.947459
Target:  5'- cGGcgGCGGG-GACCcCGgcGGCG-GGACa -3'
miRNA:   3'- -CCuuUGCCCaUUGGaGC--CCGCuCCUG- -5'
5506 3' -55 NC_001798.1 + 154405 0.66 0.947459
Target:  5'- -aAGGCGGGcGGCggcggCGGGCGGGcGGCa -3'
miRNA:   3'- ccUUUGCCCaUUGga---GCCCGCUC-CUG- -5'
5506 3' -55 NC_001798.1 + 15459 0.66 0.947459
Target:  5'- gGGggGucgcgUGGGUAGacgUGGGCGGGGGg -3'
miRNA:   3'- -CCuuU-----GCCCAUUggaGCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 8544 0.66 0.951632
Target:  5'- cGGAcgUGGGUcgcGGCgagGGGUGGGGGCg -3'
miRNA:   3'- -CCUuuGCCCA---UUGgagCCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 66697 0.66 0.951632
Target:  5'- gGGGGACuGGGUAGCCg-GGGUccguucccacaGuGGGCu -3'
miRNA:   3'- -CCUUUG-CCCAUUGGagCCCG-----------CuCCUG- -5'
5506 3' -55 NC_001798.1 + 81269 0.66 0.951632
Target:  5'- ---cGCGGG--ACCUugCGGGgGGGGAUg -3'
miRNA:   3'- ccuuUGCCCauUGGA--GCCCgCUCCUG- -5'
5506 3' -55 NC_001798.1 + 102025 0.66 0.951632
Target:  5'- gGGuAGCGGGgugg-UUGGGCGGGGGu -3'
miRNA:   3'- -CCuUUGCCCauuggAGCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 103648 0.66 0.951632
Target:  5'- gGGggGgGGGUGGaagCGGGCaAGGGa -3'
miRNA:   3'- -CCuuUgCCCAUUggaGCCCGcUCCUg -5'
5506 3' -55 NC_001798.1 + 148410 0.66 0.951632
Target:  5'- -cGGGCGGGgugggcGCCg-GGGCGGGGGu -3'
miRNA:   3'- ccUUUGCCCau----UGGagCCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 153318 0.66 0.951632
Target:  5'- cGGGcuCGGGcccgagcucgGGCCUCGGGCuccAGGcACg -3'
miRNA:   3'- -CCUuuGCCCa---------UUGGAGCCCGc--UCC-UG- -5'
5506 3' -55 NC_001798.1 + 105191 0.66 0.947459
Target:  5'- cGGcgGCGGGgc-CCgcggUGGGCGAcGGCg -3'
miRNA:   3'- -CCuuUGCCCauuGGa---GCCCGCUcCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.