miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 3' -55 NC_001798.1 + 37 0.68 0.899353
Target:  5'- cGggGgGGGUGuuUUUUGGGgGGGGGCg -3'
miRNA:   3'- cCuuUgCCCAUu-GGAGCCCgCUCCUG- -5'
5506 3' -55 NC_001798.1 + 67 0.66 0.947459
Target:  5'- -aAGGCGGGcGGCggcggCGGGCGGGcGGCa -3'
miRNA:   3'- ccUUUGCCCaUUGga---GCCCGCUC-CUG- -5'
5506 3' -55 NC_001798.1 + 2560 0.69 0.856952
Target:  5'- cGGGAgGGGcGGCCgcgGGGCGGGGGg -3'
miRNA:   3'- cCUUUgCCCaUUGGag-CCCGCUCCUg -5'
5506 3' -55 NC_001798.1 + 2981 0.67 0.925259
Target:  5'- --cGGCGGGgcggccggcccgcgGGCCcCGGGCGcgGGGGCg -3'
miRNA:   3'- ccuUUGCCCa-------------UUGGaGCCCGC--UCCUG- -5'
5506 3' -55 NC_001798.1 + 3210 0.72 0.713045
Target:  5'- cGGAGGCGGGcgcGGCgCUCaGGCGccccAGGGCg -3'
miRNA:   3'- -CCUUUGCCCa--UUG-GAGcCCGC----UCCUG- -5'
5506 3' -55 NC_001798.1 + 3807 0.66 0.943056
Target:  5'- cGAAcCGGGcccgcgccuccuccGCCUCGGGCGccccccagaggccGGGGCg -3'
miRNA:   3'- cCUUuGCCCau------------UGGAGCCCGC-------------UCCUG- -5'
5506 3' -55 NC_001798.1 + 3892 0.68 0.886097
Target:  5'- cGGggGCGGGggGCCggcccCGGGCcacGGCu -3'
miRNA:   3'- -CCuuUGCCCauUGGa----GCCCGcucCUG- -5'
5506 3' -55 NC_001798.1 + 4101 0.69 0.856952
Target:  5'- cGggGCGGGcucGGCCcUGGGCGggcucggccGGGGCg -3'
miRNA:   3'- cCuuUGCCCa--UUGGaGCCCGC---------UCCUG- -5'
5506 3' -55 NC_001798.1 + 6252 0.75 0.541413
Target:  5'- gGGGGACGGGgggacgGGCCggggggaCGGGCcggGGGGACg -3'
miRNA:   3'- -CCUUUGCCCa-----UUGGa------GCCCG---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 6299 0.69 0.841149
Target:  5'- gGGGGACGGGccggggggacgGGCCggggggaCGGGCcggGGGGACg -3'
miRNA:   3'- -CCUUUGCCCa----------UUGGa------GCCCG---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 6384 0.7 0.771023
Target:  5'- gGGggGcCGGGggGCCgggGGGCcggGGGGACg -3'
miRNA:   3'- -CCuuU-GCCCauUGGag-CCCG---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 6417 0.65 0.955576
Target:  5'- gGGGGACGGGggGACgggGGGacggGGGGACg -3'
miRNA:   3'- -CCUUUGCCCa-UUGgagCCCg---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 6449 0.65 0.955576
Target:  5'- gGGGGACGGGggGACgggGGGacggGGGGACg -3'
miRNA:   3'- -CCUUUGCCCa-UUGgagCCCg---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 6481 0.65 0.955576
Target:  5'- gGGGGACGGGggGACgggGGGacggGGGGACg -3'
miRNA:   3'- -CCUUUGCCCa-UUGgagCCCg---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 6529 0.71 0.733718
Target:  5'- gGGGGACGGGgggacgGGCCggggggacggggggaCGGGCcggGGGGACg -3'
miRNA:   3'- -CCUUUGCCCa-----UUGGa--------------GCCCG---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 6592 0.71 0.733718
Target:  5'- gGGGGACGGGgggacgGGCCggggggacggggggaCGGGCcggGGGGACg -3'
miRNA:   3'- -CCUUUGCCCa-----UUGGa--------------GCCCG---CUCCUG- -5'
5506 3' -55 NC_001798.1 + 8544 0.66 0.951632
Target:  5'- cGGAcgUGGGUcgcGGCgagGGGUGGGGGCg -3'
miRNA:   3'- -CCUuuGCCCA---UUGgagCCCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 9680 0.67 0.911692
Target:  5'- cGGGAugGGG-GGCUcucacgugCGGGCGGguGGGCu -3'
miRNA:   3'- -CCUUugCCCaUUGGa-------GCCCGCU--CCUG- -5'
5506 3' -55 NC_001798.1 + 9912 0.66 0.933547
Target:  5'- cGGGACcGGUuccaugcgAGCCUCGgcaaaacaucgcGGCGGGGGCg -3'
miRNA:   3'- cCUUUGcCCA--------UUGGAGC------------CCGCUCCUG- -5'
5506 3' -55 NC_001798.1 + 10294 0.69 0.841149
Target:  5'- gGGcGACGGGggGACgaCGGGgGGGGGg -3'
miRNA:   3'- -CCuUUGCCCa-UUGgaGCCCgCUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.