Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5507 | 5' | -50.8 | NC_001798.1 | + | 55998 | 0.69 | 0.975618 |
Target: 5'- gGGCGAGGGGCUgGUAggCGGGu---- -3' miRNA: 3'- gCUGCUCCCUGA-CAUaaGCCUcaacc -5' |
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5507 | 5' | -50.8 | NC_001798.1 | + | 108853 | 0.69 | 0.975618 |
Target: 5'- aCGACGGGcGGGCUGgcGUUCGG-GUg-- -3' miRNA: 3'- -GCUGCUC-CCUGACa-UAAGCCuCAacc -5' |
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5507 | 5' | -50.8 | NC_001798.1 | + | 43648 | 0.7 | 0.952477 |
Target: 5'- gGGCGAGGGcugcuccguGCUGgccgCGGGGcUGGg -3' miRNA: 3'- gCUGCUCCC---------UGACauaaGCCUCaACC- -5' |
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5507 | 5' | -50.8 | NC_001798.1 | + | 57526 | 0.71 | 0.923527 |
Target: 5'- gGGCGuGGGugUG-GUUCGGGGggcGGa -3' miRNA: 3'- gCUGCuCCCugACaUAAGCCUCaa-CC- -5' |
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5507 | 5' | -50.8 | NC_001798.1 | + | 68134 | 0.71 | 0.928434 |
Target: 5'- aCGGCGAGGGcggaguuGgUGUGUagGGGGggGGa -3' miRNA: 3'- -GCUGCUCCC-------UgACAUAagCCUCaaCC- -5' |
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5507 | 5' | -50.8 | NC_001798.1 | + | 10307 | 0.71 | 0.939104 |
Target: 5'- aCGACGGGGGGggGg--UUGGGGggGGa -3' miRNA: 3'- -GCUGCUCCCUgaCauaAGCCUCaaCC- -5' |
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5507 | 5' | -50.8 | NC_001798.1 | + | 56181 | 0.71 | 0.943804 |
Target: 5'- aCGGCGGGGGGgUGggg-UGGGGUgUGGu -3' miRNA: 3'- -GCUGCUCCCUgACauaaGCCUCA-ACC- -5' |
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5507 | 5' | -50.8 | NC_001798.1 | + | 26620 | 0.72 | 0.892648 |
Target: 5'- aCGACGAcGGACUGUuUggGGAGUgacgGGg -3' miRNA: 3'- -GCUGCUcCCUGACAuAagCCUCAa---CC- -5' |
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5507 | 5' | -50.8 | NC_001798.1 | + | 4846 | 0.74 | 0.831285 |
Target: 5'- gCGGCGGGGcGACgGUccggGUUCGGGGU-GGg -3' miRNA: 3'- -GCUGCUCC-CUGaCA----UAAGCCUCAaCC- -5' |
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5507 | 5' | -50.8 | NC_001798.1 | + | 50576 | 0.76 | 0.748282 |
Target: 5'- gGugGGGGGugUGUGccgUUGG-GUUGGg -3' miRNA: 3'- gCugCUCCCugACAUa--AGCCuCAACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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