miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5507 5' -50.8 NC_001798.1 + 100996 0.67 0.992764
Target:  5'- gCGGgGAGGGGgaGgaaggcgCGGAGggGGg -3'
miRNA:   3'- -GCUgCUCCCUgaCauaa---GCCUCaaCC- -5'
5507 5' -50.8 NC_001798.1 + 67198 0.66 0.994324
Target:  5'- gGGCGGGGGGacagccugggguccUUGggGUUCGGGGguccUUGGg -3'
miRNA:   3'- gCUGCUCCCU--------------GACa-UAAGCCUC----AACC- -5'
5507 5' -50.8 NC_001798.1 + 149394 0.66 0.995324
Target:  5'- cCGACGcgGGGGGCgucggGUAgUCGGGGg--- -3'
miRNA:   3'- -GCUGC--UCCCUGa----CAUaAGCCUCaacc -5'
5507 5' -50.8 NC_001798.1 + 95922 0.66 0.995324
Target:  5'- uGGCGAguccuggguGGGugUGUGg--GGAGggGGg -3'
miRNA:   3'- gCUGCU---------CCCugACAUaagCCUCaaCC- -5'
5507 5' -50.8 NC_001798.1 + 101836 0.66 0.995395
Target:  5'- gCGGCGGGGGGaggcGUGggucccggcggcggCGGAGggGGg -3'
miRNA:   3'- -GCUGCUCCCUga--CAUaa------------GCCUCaaCC- -5'
5507 5' -50.8 NC_001798.1 + 10593 0.66 0.995991
Target:  5'- -aACGGGGGACUGUAUgcuauggcgagCGGuuccgGGg -3'
miRNA:   3'- gcUGCUCCCUGACAUAa----------GCCucaa-CC- -5'
5507 5' -50.8 NC_001798.1 + 48530 0.66 0.995991
Target:  5'- uGGCGAGGGGCgGga---GGGGcgGGa -3'
miRNA:   3'- gCUGCUCCCUGaCauaagCCUCaaCC- -5'
5507 5' -50.8 NC_001798.1 + 92622 0.66 0.995991
Target:  5'- aCGACGGGGGacgcGCUGUGcgagcggcUCGGAc-UGGa -3'
miRNA:   3'- -GCUGCUCCC----UGACAUa-------AGCCUcaACC- -5'
5507 5' -50.8 NC_001798.1 + 148379 0.66 0.996633
Target:  5'- uGAgGAGGGGCgggcguggcgggcagGUGUgcgggCGGGGU-GGg -3'
miRNA:   3'- gCUgCUCCCUGa--------------CAUAa----GCCUCAaCC- -5'
5507 5' -50.8 NC_001798.1 + 150089 0.66 0.997093
Target:  5'- gGGCGAGGGGCgagcg-CGGGGcggcGGa -3'
miRNA:   3'- gCUGCUCCCUGacauaaGCCUCaa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.