Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5507 | 5' | -50.8 | NC_001798.1 | + | 101836 | 0.66 | 0.995395 |
|
Target: 5'- gCGGCGGGGGGaggcGUGggucccggcggcggCGGAGggGGg -3' miRNA: 3'- -GCUGCUCCCUga--CAUaa------------GCCUCaaCC- -5' |
|||||||
| 5507 | 5' | -50.8 | NC_001798.1 | + | 149394 | 0.66 | 0.995324 |
|
Target: 5'- cCGACGcgGGGGGCgucggGUAgUCGGGGg--- -3' miRNA: 3'- -GCUGC--UCCCUGa----CAUaAGCCUCaacc -5' |
|||||||
| 5507 | 5' | -50.8 | NC_001798.1 | + | 95922 | 0.66 | 0.995324 |
|
Target: 5'- uGGCGAguccuggguGGGugUGUGg--GGAGggGGg -3' miRNA: 3'- gCUGCU---------CCCugACAUaagCCUCaaCC- -5' |
|||||||
| 5507 | 5' | -50.8 | NC_001798.1 | + | 67198 | 0.66 | 0.994324 |
|
Target: 5'- gGGCGGGGGGacagccugggguccUUGggGUUCGGGGguccUUGGg -3' miRNA: 3'- gCUGCUCCCU--------------GACa-UAAGCCUC----AACC- -5' |
|||||||
| 5507 | 5' | -50.8 | NC_001798.1 | + | 100996 | 0.67 | 0.992764 |
|
Target: 5'- gCGGgGAGGGGgaGgaaggcgCGGAGggGGg -3' miRNA: 3'- -GCUgCUCCCUgaCauaa---GCCUCaaCC- -5' |
|||||||
| 5507 | 5' | -50.8 | NC_001798.1 | + | 15194 | 0.67 | 0.992764 |
|
Target: 5'- gGugGGGGGGCUGgcgAgcCGGGGg--- -3' miRNA: 3'- gCugCUCCCUGACa--UaaGCCUCaacc -5' |
|||||||
| 5507 | 5' | -50.8 | NC_001798.1 | + | 105722 | 0.67 | 0.991697 |
|
Target: 5'- uCGACacccAGGGGCUGUugUCGGG--UGGg -3' miRNA: 3'- -GCUGc---UCCCUGACAuaAGCCUcaACC- -5' |
|||||||
| 5507 | 5' | -50.8 | NC_001798.1 | + | 34159 | 0.67 | 0.990509 |
|
Target: 5'- aCGACGGGGGGggGggaaaCGGGGgUGGg -3' miRNA: 3'- -GCUGCUCCCUgaCauaa-GCCUCaACC- -5' |
|||||||
| 5507 | 5' | -50.8 | NC_001798.1 | + | 112837 | 0.67 | 0.989192 |
|
Target: 5'- gGGCGuGGGugUGaauUUCGGGGguuccGGg -3' miRNA: 3'- gCUGCuCCCugACau-AAGCCUCaa---CC- -5' |
|||||||
| 5507 | 5' | -50.8 | NC_001798.1 | + | 50576 | 0.76 | 0.748282 |
|
Target: 5'- gGugGGGGGugUGUGccgUUGG-GUUGGg -3' miRNA: 3'- gCugCUCCCugACAUa--AGCCuCAACC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home