Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5508 | 3' | -55.1 | NC_001798.1 | + | 114494 | 0.66 | 0.908896 |
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Target: 5'- gGGAGGCCCUGGAcgggacGGgCAUUagcCUGc-- -3' miRNA: 3'- aCCUCUGGGACCU------CCgGUAA---GACaaa -5' |
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| 5508 | 3' | -55.1 | NC_001798.1 | + | 114706 | 0.68 | 0.826462 |
|
Target: 5'- cGGGcGACCCUGGucGCCGagCUGa-- -3' miRNA: 3'- aCCU-CUGGGACCucCGGUaaGACaaa -5' |
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| 5508 | 3' | -55.1 | NC_001798.1 | + | 115188 | 0.66 | 0.891905 |
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Target: 5'- cUGGAGGCCCUGGAGagacgcaucuacgccGCCAc------- -3' miRNA: 3'- -ACCUCUGGGACCUC---------------CGGUaagacaaa -5' |
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| 5508 | 3' | -55.1 | NC_001798.1 | + | 117022 | 0.68 | 0.826462 |
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Target: 5'- cUGGuccccccGGCCCUGGGGGCCAacuacUUCUc--- -3' miRNA: 3'- -ACCu------CUGGGACCUCCGGU-----AAGAcaaa -5' |
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| 5508 | 3' | -55.1 | NC_001798.1 | + | 131378 | 0.66 | 0.889146 |
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Target: 5'- gGGGGAucCCCUGGGGGCCcggCg---- -3' miRNA: 3'- aCCUCU--GGGACCUCCGGuaaGacaaa -5' |
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| 5508 | 3' | -55.1 | NC_001798.1 | + | 134212 | 0.69 | 0.761833 |
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Target: 5'- cUGGAGcCCCUGGGGGaCCcgaccCUGUg- -3' miRNA: 3'- -ACCUCuGGGACCUCC-GGuaa--GACAaa -5' |
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| 5508 | 3' | -55.1 | NC_001798.1 | + | 134263 | 0.67 | 0.874788 |
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Target: 5'- cUGGcGGCCCUGGAGcGCCAg------- -3' miRNA: 3'- -ACCuCUGGGACCUC-CGGUaagacaaa -5' |
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| 5508 | 3' | -55.1 | NC_001798.1 | + | 135301 | 0.72 | 0.628715 |
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Target: 5'- cGGAG-CCCUGGgcccGGGCCGUgCUGg-- -3' miRNA: 3'- aCCUCuGGGACC----UCCGGUAaGACaaa -5' |
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| 5508 | 3' | -55.1 | NC_001798.1 | + | 144546 | 0.7 | 0.691315 |
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Target: 5'- gGGAGACCCgccgugGGGGGgCGUUCg---- -3' miRNA: 3'- aCCUCUGGGa-----CCUCCgGUAAGacaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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