Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5508 | 3' | -55.1 | NC_001798.1 | + | 45004 | 0.66 | 0.908896 |
Target: 5'- aGGAGGCCCUGGcgguGGUCAaugcgcUUUUGc-- -3' miRNA: 3'- aCCUCUGGGACCu---CCGGU------AAGACaaa -5' |
|||||||
5508 | 3' | -55.1 | NC_001798.1 | + | 114494 | 0.66 | 0.908896 |
Target: 5'- gGGAGGCCCUGGAcgggacGGgCAUUagcCUGc-- -3' miRNA: 3'- aCCUCUGGGACCU------CCgGUAA---GACaaa -5' |
|||||||
5508 | 3' | -55.1 | NC_001798.1 | + | 95587 | 0.66 | 0.914989 |
Target: 5'- cGGAGGCCCUGGucaGCCAgcUCg---- -3' miRNA: 3'- aCCUCUGGGACCuc-CGGUa-AGacaaa -5' |
|||||||
5508 | 3' | -55.1 | NC_001798.1 | + | 57451 | 0.66 | 0.914989 |
Target: 5'- cGGGGGCCCggucuugGGGGGCgGggCcgGUUUg -3' miRNA: 3'- aCCUCUGGGa------CCUCCGgUaaGa-CAAA- -5' |
|||||||
5508 | 3' | -55.1 | NC_001798.1 | + | 79228 | 0.66 | 0.914989 |
Target: 5'- gGGAGaugaacuuugacGCCCUgGGGGGCCug-CUGg-- -3' miRNA: 3'- aCCUC------------UGGGA-CCUCCGGuaaGACaaa -5' |
|||||||
5508 | 3' | -55.1 | NC_001798.1 | + | 111594 | 0.66 | 0.920832 |
Target: 5'- gGGGGGCCCggcgGGGcGGCCuc-CUGg-- -3' miRNA: 3'- aCCUCUGGGa---CCU-CCGGuaaGACaaa -5' |
|||||||
5508 | 3' | -55.1 | NC_001798.1 | + | 5173 | 0.66 | 0.920832 |
Target: 5'- gGGuAGAUCCUGGcGGCCGcgUCgGUa- -3' miRNA: 3'- aCC-UCUGGGACCuCCGGUa-AGaCAaa -5' |
|||||||
5508 | 3' | -55.1 | NC_001798.1 | + | 79138 | 0.66 | 0.920832 |
Target: 5'- cGGAGGCCgUGGAGGag---CUGg-- -3' miRNA: 3'- aCCUCUGGgACCUCCgguaaGACaaa -5' |
|||||||
5508 | 3' | -55.1 | NC_001798.1 | + | 97213 | 0.66 | 0.920832 |
Target: 5'- aGGAGACCgCcgcGGuGGCCGUggagCUGg-- -3' miRNA: 3'- aCCUCUGG-Ga--CCuCCGGUAa---GACaaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home