miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5508 5' -51.5 NC_001798.1 + 56552 0.66 0.994834
Target:  5'- --cGAUGUcUGGGACGcGACGgccaccuUCUCCGc -3'
miRNA:   3'- ccuCUGCAaACCCUGC-UUGC-------AGAGGU- -5'
5508 5' -51.5 NC_001798.1 + 6600 0.66 0.994104
Target:  5'- gGGGGACGggccgggGGGACGGggggACGgg-CCGg -3'
miRNA:   3'- -CCUCUGCaaa----CCCUGCU----UGCagaGGU- -5'
5508 5' -51.5 NC_001798.1 + 6558 0.66 0.994104
Target:  5'- gGGGGACGggccgggGGGACGGggggACGgg-CCGg -3'
miRNA:   3'- -CCUCUGCaaa----CCCUGCU----UGCagaGGU- -5'
5508 5' -51.5 NC_001798.1 + 90395 0.66 0.994104
Target:  5'- gGGGGGCGcggUUGGGcCGGcGCGUUcCCGc -3'
miRNA:   3'- -CCUCUGCa--AACCCuGCU-UGCAGaGGU- -5'
5508 5' -51.5 NC_001798.1 + 1980 0.66 0.993198
Target:  5'- cGAGACGUcgGGGGC--GCGg-UCCAg -3'
miRNA:   3'- cCUCUGCAaaCCCUGcuUGCagAGGU- -5'
5508 5' -51.5 NC_001798.1 + 125244 0.66 0.993198
Target:  5'- -uAGGCGUugcgUUGGGGCacGGCGUcCUCCGg -3'
miRNA:   3'- ccUCUGCA----AACCCUGc-UUGCA-GAGGU- -5'
5508 5' -51.5 NC_001798.1 + 27422 0.66 0.992184
Target:  5'- gGGGGGCGgggagcUUGGGAgugugUGGugGUCUgCGg -3'
miRNA:   3'- -CCUCUGCa-----AACCCU-----GCUugCAGAgGU- -5'
5508 5' -51.5 NC_001798.1 + 120070 0.66 0.991054
Target:  5'- cGGAGACGagcuccUGGGACGccauGACGcCcCCGg -3'
miRNA:   3'- -CCUCUGCaa----ACCCUGC----UUGCaGaGGU- -5'
5508 5' -51.5 NC_001798.1 + 16184 0.66 0.991054
Target:  5'- cGGGGACcgggGGGACGcACGggccgccCUCCGc -3'
miRNA:   3'- -CCUCUGcaaaCCCUGCuUGCa------GAGGU- -5'
5508 5' -51.5 NC_001798.1 + 12711 0.66 0.989799
Target:  5'- uGGGGGCGgcgGGGGCGuggugcggcgcGACGUC-CUg -3'
miRNA:   3'- -CCUCUGCaaaCCCUGC-----------UUGCAGaGGu -5'
5508 5' -51.5 NC_001798.1 + 11178 0.66 0.989799
Target:  5'- uGGGGGCGg-UGGGGCGGGCcug-CCGa -3'
miRNA:   3'- -CCUCUGCaaACCCUGCUUGcagaGGU- -5'
5508 5' -51.5 NC_001798.1 + 95686 0.66 0.989799
Target:  5'- cGGcGGCGgcgGGGGCGGccgGCGUCgcCCGa -3'
miRNA:   3'- -CCuCUGCaaaCCCUGCU---UGCAGa-GGU- -5'
5508 5' -51.5 NC_001798.1 + 133959 0.67 0.98841
Target:  5'- cGGcauCGUUUGGGugGAggagaGCGUCagcgCCAu -3'
miRNA:   3'- -CCucuGCAAACCCugCU-----UGCAGa---GGU- -5'
5508 5' -51.5 NC_001798.1 + 88058 0.67 0.986554
Target:  5'- gGGGGGCGggcucguccccUGGGGCGGcgGCGUCUa-- -3'
miRNA:   3'- -CCUCUGCaa---------ACCCUGCU--UGCAGAggu -5'
5508 5' -51.5 NC_001798.1 + 136131 0.67 0.985195
Target:  5'- uGGaAGGCGUgUGGGGCGAggGCGggagCUUUg -3'
miRNA:   3'- -CC-UCUGCAaACCCUGCU--UGCa---GAGGu -5'
5508 5' -51.5 NC_001798.1 + 6241 0.67 0.983353
Target:  5'- gGGGGACGggcggGGGACGGggggACGgg-CCGg -3'
miRNA:   3'- -CCUCUGCaaa--CCCUGCU----UGCagaGGU- -5'
5508 5' -51.5 NC_001798.1 + 59686 0.67 0.981342
Target:  5'- uGGGGGCGgc-GGGcACGccCGUCUUCGg -3'
miRNA:   3'- -CCUCUGCaaaCCC-UGCuuGCAGAGGU- -5'
5508 5' -51.5 NC_001798.1 + 15948 0.67 0.981342
Target:  5'- cGGGGGCccaaUGGGGCGGcagaccccgACGUCUuCCGu -3'
miRNA:   3'- -CCUCUGcaa-ACCCUGCU---------UGCAGA-GGU- -5'
5508 5' -51.5 NC_001798.1 + 22763 0.68 0.976784
Target:  5'- uGGcGGACGa---GGACGGgggACGUCUCCGg -3'
miRNA:   3'- -CC-UCUGCaaacCCUGCU---UGCAGAGGU- -5'
5508 5' -51.5 NC_001798.1 + 102483 0.69 0.9653
Target:  5'- aGGAGGCGgguagugcgGGGACGGGCcggcgccgggGUgUCCGu -3'
miRNA:   3'- -CCUCUGCaaa------CCCUGCUUG----------CAgAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.