Results 41 - 60 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 28959 | 0.76 | 0.093122 |
Target: 5'- -cCCGGC-GCCGCCCCGCCGCuccGCcCg -3' miRNA: 3'- caGGCCGcCGGUGGGGCGGCGu--CGaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 29040 | 0.72 | 0.17956 |
Target: 5'- -cCCGGCGaCCGCCCCGCgC-CGGCUUc -3' miRNA: 3'- caGGCCGCcGGUGGGGCG-GcGUCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 29794 | 0.66 | 0.397677 |
Target: 5'- cUCCcgGGCGGaCCccgGCCCCgagcggccGCCGCGGCa- -3' miRNA: 3'- cAGG--CCGCC-GG---UGGGG--------CGGCGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 31205 | 0.67 | 0.3666 |
Target: 5'- -aCCGGCGcccccuGgCGCCCCGCggaGCAGCa- -3' miRNA: 3'- caGGCCGC------CgGUGGGGCGg--CGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 31240 | 0.67 | 0.3666 |
Target: 5'- --gCGGCGG-CGCCCCGuuGCgGGCg- -3' miRNA: 3'- cagGCCGCCgGUGGGGCggCG-UCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 31276 | 0.74 | 0.128277 |
Target: 5'- gGUCUGGgGGCgGCCCUGCCGUcGCg- -3' miRNA: 3'- -CAGGCCgCCGgUGGGGCGGCGuCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 31848 | 0.67 | 0.389751 |
Target: 5'- -cCCGGU-GCCGCCCCccacGCCGCGGa-- -3' miRNA: 3'- caGGCCGcCGGUGGGG----CGGCGUCgag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 31878 | 0.66 | 0.404899 |
Target: 5'- --gCGGCGGcCCGCCCCcggaagaGgCGCGGgUCg -3' miRNA: 3'- cagGCCGCC-GGUGGGG-------CgGCGUCgAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 33634 | 0.7 | 0.231883 |
Target: 5'- -cCCGGCGcCCACCCCGcCCGCAcaccuGCcCg -3' miRNA: 3'- caGGCCGCcGGUGGGGC-GGCGU-----CGaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 34796 | 0.66 | 0.438819 |
Target: 5'- -gCCGGCgcGGCCcgggGCCCCGgggcccCCGC-GCUCc -3' miRNA: 3'- caGGCCG--CCGG----UGGGGC------GGCGuCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 35015 | 0.67 | 0.374211 |
Target: 5'- -cUCGGCGGCCaaGCCCCGgcCCGCccggGGgUCc -3' miRNA: 3'- caGGCCGCCGG--UGGGGC--GGCG----UCgAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 35556 | 0.7 | 0.226639 |
Target: 5'- -gCCGGCccGGCCcgGCCCCGgagcCCGCGGCg- -3' miRNA: 3'- caGGCCG--CCGG--UGGGGC----GGCGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 35609 | 0.71 | 0.192693 |
Target: 5'- cUCCGGgGGCuccgCACUCUGCC-CGGCUCg -3' miRNA: 3'- cAGGCCgCCG----GUGGGGCGGcGUCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 37412 | 0.7 | 0.237229 |
Target: 5'- gGUCCGuGgGGCCggccgaccaACCCCGCgUGCAaaGCUCg -3' miRNA: 3'- -CAGGC-CgCCGG---------UGGGGCG-GCGU--CGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 39681 | 0.77 | 0.080168 |
Target: 5'- -cCCGGCGGCgACCUCGCCGCccGcCUCg -3' miRNA: 3'- caGGCCGCCGgUGGGGCGGCGu-C-GAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 40016 | 0.67 | 0.351701 |
Target: 5'- cGUCgCGGCGGCCcuCCUCGUC-CcGCUCc -3' miRNA: 3'- -CAG-GCCGCCGGu-GGGGCGGcGuCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 40846 | 0.74 | 0.119208 |
Target: 5'- uUuuGGgGGCCgaGCCCCGCCGCAGgaUg -3' miRNA: 3'- cAggCCgCCGG--UGGGGCGGCGUCgaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 43526 | 0.7 | 0.226639 |
Target: 5'- --gCGGCGGCCGCgucuCCCGCCaggGCGGUUUc -3' miRNA: 3'- cagGCCGCCGGUG----GGGCGG---CGUCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 43879 | 0.67 | 0.381928 |
Target: 5'- -cCCaGCGGCCgcgGCCCCGCgggaGUacuGGCUCu -3' miRNA: 3'- caGGcCGCCGG---UGGGGCGg---CG---UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 44162 | 0.67 | 0.374211 |
Target: 5'- -cCCGGCGGUaCGCCCCcaGCaCGCGcGcCUCg -3' miRNA: 3'- caGGCCGCCG-GUGGGG--CG-GCGU-C-GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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