miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 154529 0.68 0.316362
Target:  5'- uUCCcGCGGgCGCCCC-CgCGCGGCUUu -3'
miRNA:   3'- cAGGcCGCCgGUGGGGcG-GCGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 154469 0.66 0.438819
Target:  5'- -cCCGGagcCGGCCGCUCCcCCGCgGGCg- -3'
miRNA:   3'- caGGCC---GCCGGUGGGGcGGCG-UCGag -5'
5510 3' -66.6 NC_001798.1 + 154123 0.68 0.32321
Target:  5'- -cCCGGCGGCggggACCCCGgCgGCGGgaCa -3'
miRNA:   3'- caGGCCGCCGg---UGGGGC-GgCGUCgaG- -5'
5510 3' -66.6 NC_001798.1 + 153845 0.68 0.344414
Target:  5'- cUCCGGC-GCCuuccCCCCGCCcucGCUCg -3'
miRNA:   3'- cAGGCCGcCGGu---GGGGCGGcguCGAG- -5'
5510 3' -66.6 NC_001798.1 + 153691 0.73 0.141362
Target:  5'- --gCGGgGGCCGCCgCCGgCGCAGgCUCa -3'
miRNA:   3'- cagGCCgCCGGUGG-GGCgGCGUC-GAG- -5'
5510 3' -66.6 NC_001798.1 + 153253 0.66 0.405707
Target:  5'- -aCCcGCGcGCCGCCgCCGCCGCcucCUCc -3'
miRNA:   3'- caGGcCGC-CGGUGG-GGCGGCGuc-GAG- -5'
5510 3' -66.6 NC_001798.1 + 153184 0.69 0.271492
Target:  5'- -gCCGGCcgaGGCCGCCCuCGCCG--GUUCa -3'
miRNA:   3'- caGGCCG---CCGGUGGG-GCGGCguCGAG- -5'
5510 3' -66.6 NC_001798.1 + 153057 0.66 0.430395
Target:  5'- -gCCGGC-GCCGCCCC-CUGgGGCg- -3'
miRNA:   3'- caGGCCGcCGGUGGGGcGGCgUCGag -5'
5510 3' -66.6 NC_001798.1 + 152235 0.69 0.283767
Target:  5'- --gCGGCGGCCGCUcggggccgggguCCGCCcgGgAGCUCg -3'
miRNA:   3'- cagGCCGCCGGUGG------------GGCGG--CgUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 152198 0.66 0.405707
Target:  5'- -cCCGGgGGUCGCCCUcucaccguGCCGgGGgUCu -3'
miRNA:   3'- caGGCCgCCGGUGGGG--------CGGCgUCgAG- -5'
5510 3' -66.6 NC_001798.1 + 150808 0.68 0.344414
Target:  5'- --aCGGgGcGCCGCCgCUGCUGCuGCUCc -3'
miRNA:   3'- cagGCCgC-CGGUGG-GGCGGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 150362 0.68 0.302995
Target:  5'- cGUCCaccggcacggcgGGCGGCgCggGCCCgGCCGCGuccgcGCUCg -3'
miRNA:   3'- -CAGG------------CCGCCG-G--UGGGgCGGCGU-----CGAG- -5'
5510 3' -66.6 NC_001798.1 + 150166 0.69 0.289432
Target:  5'- uUCCGGgGGCgggccgcCGCCCCcuCCGCGGCg- -3'
miRNA:   3'- cAGGCCgCCG-------GUGGGGc-GGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 149474 0.66 0.430395
Target:  5'- --gCGGgGGCCGCggCCCGCaGCAGgUCc -3'
miRNA:   3'- cagGCCgCCGGUG--GGGCGgCGUCgAG- -5'
5510 3' -66.6 NC_001798.1 + 147077 0.78 0.062166
Target:  5'- -cUCGGCGGCCGCCCCcuccggcGCCGCGcGUUCg -3'
miRNA:   3'- caGGCCGCCGGUGGGG-------CGGCGU-CGAG- -5'
5510 3' -66.6 NC_001798.1 + 146497 0.66 0.405707
Target:  5'- -gCCGGgcCGGCaaCGCCCCgcgccgGCCGCGGCg- -3'
miRNA:   3'- caGGCC--GCCG--GUGGGG------CGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 145726 0.71 0.221496
Target:  5'- -cCCGGCcccGGCCcgcGCCCCGCCGCcacacccacGGCa- -3'
miRNA:   3'- caGGCCG---CCGG---UGGGGCGGCG---------UCGag -5'
5510 3' -66.6 NC_001798.1 + 145504 0.66 0.447336
Target:  5'- -cCCGGCcGCCGcgcgcCCCCGCC-CGGC-Cg -3'
miRNA:   3'- caGGCCGcCGGU-----GGGGCGGcGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 145462 0.66 0.447336
Target:  5'- -cCCGGCcGCCGcgcgcCCCCGCC-CGGC-Cg -3'
miRNA:   3'- caGGCCGcCGGU-----GGGGCGGcGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 145420 0.66 0.447336
Target:  5'- -cCCGGCcGCCGcgcgcCCCCGCC-CGGC-Cg -3'
miRNA:   3'- caGGCCGcCGGU-----GGGGCGGcGUCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.