miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 5' -55.5 NC_001798.1 + 52362 0.66 0.932024
Target:  5'- -cGAGgcgCugGGCGacaccgcggcGCgCCGCCUgcUCGCc -3'
miRNA:   3'- caCUCa--GugCCGU----------UGgGGUGGA--AGCG- -5'
5510 5' -55.5 NC_001798.1 + 149456 0.66 0.932024
Target:  5'- -aGGGU-GCGGCGGCUCCACgCgggggcCGCg -3'
miRNA:   3'- caCUCAgUGCCGUUGGGGUG-Gaa----GCG- -5'
5510 5' -55.5 NC_001798.1 + 120836 0.66 0.932024
Target:  5'- uUGAGcagcUCGuCGGCGGCCCCGCggaggUUGUa -3'
miRNA:   3'- cACUC----AGU-GCCGUUGGGGUGga---AGCG- -5'
5510 5' -55.5 NC_001798.1 + 27938 0.66 0.932024
Target:  5'- -gGGGUCcCGGCGccgGCCgCGCCccggCGCu -3'
miRNA:   3'- caCUCAGuGCCGU---UGGgGUGGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 129676 0.66 0.926814
Target:  5'- cGUG-GUCACccgGGCGccgggGCCCCaguACCggCGCg -3'
miRNA:   3'- -CACuCAGUG---CCGU-----UGGGG---UGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 4340 0.66 0.926814
Target:  5'- aUGAGUCAgaGGCGGCCgagCGCCggcggggggCGCg -3'
miRNA:   3'- cACUCAGUg-CCGUUGGg--GUGGaa-------GCG- -5'
5510 5' -55.5 NC_001798.1 + 30814 0.66 0.926814
Target:  5'- -cGGGcaaccCGCGGaCGGCCCCGCgCUcccugUCGCu -3'
miRNA:   3'- caCUCa----GUGCC-GUUGGGGUG-GA-----AGCG- -5'
5510 5' -55.5 NC_001798.1 + 100495 0.66 0.926814
Target:  5'- cUGAGUCGCGcCGACgucaCCACCgUCaGCa -3'
miRNA:   3'- cACUCAGUGCcGUUGg---GGUGGaAG-CG- -5'
5510 5' -55.5 NC_001798.1 + 150858 0.66 0.926814
Target:  5'- -cGGGUCGCGGCGGgcugggaggUUCCGCgggUCGCc -3'
miRNA:   3'- caCUCAGUGCCGUU---------GGGGUGga-AGCG- -5'
5510 5' -55.5 NC_001798.1 + 58930 0.66 0.926814
Target:  5'- -aGGGcCACGGCcgcucCCCCGCCgaccaGCc -3'
miRNA:   3'- caCUCaGUGCCGuu---GGGGUGGaag--CG- -5'
5510 5' -55.5 NC_001798.1 + 29605 0.66 0.926279
Target:  5'- -cGGGUauaaGGCAGCCCCgugugacggucggGCCgcaUUCGCa -3'
miRNA:   3'- caCUCAgug-CCGUUGGGG-------------UGG---AAGCG- -5'
5510 5' -55.5 NC_001798.1 + 52248 0.66 0.925204
Target:  5'- cGUGGGggCGCGccuGCAcccgcacuccgcccACCCCGCgUUUGCg -3'
miRNA:   3'- -CACUCa-GUGC---CGU--------------UGGGGUGgAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 51908 0.66 0.923572
Target:  5'- -cGAGccUCACGGCGuugcggcccguggggGCCgCCGCCgugcCGCu -3'
miRNA:   3'- caCUC--AGUGCCGU---------------UGG-GGUGGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 85365 0.66 0.921363
Target:  5'- ---cGcCGCGGCGuCCgucgaCACCUUCGCg -3'
miRNA:   3'- cacuCaGUGCCGUuGGg----GUGGAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 58177 0.66 0.921363
Target:  5'- -cGAGauccaCACGGCGccCCCCAgCaUCGCg -3'
miRNA:   3'- caCUCa----GUGCCGUu-GGGGUgGaAGCG- -5'
5510 5' -55.5 NC_001798.1 + 55522 0.66 0.921363
Target:  5'- ----cUCACGGCAACCCCaggGCgUUaCGUa -3'
miRNA:   3'- cacucAGUGCCGUUGGGG---UGgAA-GCG- -5'
5510 5' -55.5 NC_001798.1 + 98644 0.66 0.920805
Target:  5'- -cGAccGUCGCGGCGAacgggggUCCCGCCUcccggcCGCc -3'
miRNA:   3'- caCU--CAGUGCCGUU-------GGGGUGGAa-----GCG- -5'
5510 5' -55.5 NC_001798.1 + 138699 0.66 0.920805
Target:  5'- -gGAGUCgaacgcgACGGCcagaucagaAGCCCCggGCCggCGCg -3'
miRNA:   3'- caCUCAG-------UGCCG---------UUGGGG--UGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 30557 0.66 0.915674
Target:  5'- cGUGuG-CACGGaCGagaucGCCCCGCCccugCGCu -3'
miRNA:   3'- -CACuCaGUGCC-GU-----UGGGGUGGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 121537 0.66 0.915674
Target:  5'- --cGGUCGCGGC-GCUgCGCCUggCGUg -3'
miRNA:   3'- cacUCAGUGCCGuUGGgGUGGAa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.