Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 52362 | 0.66 | 0.932024 |
Target: 5'- -cGAGgcgCugGGCGacaccgcggcGCgCCGCCUgcUCGCc -3' miRNA: 3'- caCUCa--GugCCGU----------UGgGGUGGA--AGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 149456 | 0.66 | 0.932024 |
Target: 5'- -aGGGU-GCGGCGGCUCCACgCgggggcCGCg -3' miRNA: 3'- caCUCAgUGCCGUUGGGGUG-Gaa----GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 120836 | 0.66 | 0.932024 |
Target: 5'- uUGAGcagcUCGuCGGCGGCCCCGCggaggUUGUa -3' miRNA: 3'- cACUC----AGU-GCCGUUGGGGUGga---AGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 27938 | 0.66 | 0.932024 |
Target: 5'- -gGGGUCcCGGCGccgGCCgCGCCccggCGCu -3' miRNA: 3'- caCUCAGuGCCGU---UGGgGUGGaa--GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 129676 | 0.66 | 0.926814 |
Target: 5'- cGUG-GUCACccgGGCGccgggGCCCCaguACCggCGCg -3' miRNA: 3'- -CACuCAGUG---CCGU-----UGGGG---UGGaaGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 4340 | 0.66 | 0.926814 |
Target: 5'- aUGAGUCAgaGGCGGCCgagCGCCggcggggggCGCg -3' miRNA: 3'- cACUCAGUg-CCGUUGGg--GUGGaa-------GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 30814 | 0.66 | 0.926814 |
Target: 5'- -cGGGcaaccCGCGGaCGGCCCCGCgCUcccugUCGCu -3' miRNA: 3'- caCUCa----GUGCC-GUUGGGGUG-GA-----AGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 100495 | 0.66 | 0.926814 |
Target: 5'- cUGAGUCGCGcCGACgucaCCACCgUCaGCa -3' miRNA: 3'- cACUCAGUGCcGUUGg---GGUGGaAG-CG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 150858 | 0.66 | 0.926814 |
Target: 5'- -cGGGUCGCGGCGGgcugggaggUUCCGCgggUCGCc -3' miRNA: 3'- caCUCAGUGCCGUU---------GGGGUGga-AGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 58930 | 0.66 | 0.926814 |
Target: 5'- -aGGGcCACGGCcgcucCCCCGCCgaccaGCc -3' miRNA: 3'- caCUCaGUGCCGuu---GGGGUGGaag--CG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 29605 | 0.66 | 0.926279 |
Target: 5'- -cGGGUauaaGGCAGCCCCgugugacggucggGCCgcaUUCGCa -3' miRNA: 3'- caCUCAgug-CCGUUGGGG-------------UGG---AAGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 52248 | 0.66 | 0.925204 |
Target: 5'- cGUGGGggCGCGccuGCAcccgcacuccgcccACCCCGCgUUUGCg -3' miRNA: 3'- -CACUCa-GUGC---CGU--------------UGGGGUGgAAGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 51908 | 0.66 | 0.923572 |
Target: 5'- -cGAGccUCACGGCGuugcggcccguggggGCCgCCGCCgugcCGCu -3' miRNA: 3'- caCUC--AGUGCCGU---------------UGG-GGUGGaa--GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 85365 | 0.66 | 0.921363 |
Target: 5'- ---cGcCGCGGCGuCCgucgaCACCUUCGCg -3' miRNA: 3'- cacuCaGUGCCGUuGGg----GUGGAAGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 58177 | 0.66 | 0.921363 |
Target: 5'- -cGAGauccaCACGGCGccCCCCAgCaUCGCg -3' miRNA: 3'- caCUCa----GUGCCGUu-GGGGUgGaAGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 55522 | 0.66 | 0.921363 |
Target: 5'- ----cUCACGGCAACCCCaggGCgUUaCGUa -3' miRNA: 3'- cacucAGUGCCGUUGGGG---UGgAA-GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 98644 | 0.66 | 0.920805 |
Target: 5'- -cGAccGUCGCGGCGAacgggggUCCCGCCUcccggcCGCc -3' miRNA: 3'- caCU--CAGUGCCGUU-------GGGGUGGAa-----GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 138699 | 0.66 | 0.920805 |
Target: 5'- -gGAGUCgaacgcgACGGCcagaucagaAGCCCCggGCCggCGCg -3' miRNA: 3'- caCUCAG-------UGCCG---------UUGGGG--UGGaaGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 30557 | 0.66 | 0.915674 |
Target: 5'- cGUGuG-CACGGaCGagaucGCCCCGCCccugCGCu -3' miRNA: 3'- -CACuCaGUGCC-GU-----UGGGGUGGaa--GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 121537 | 0.66 | 0.915674 |
Target: 5'- --cGGUCGCGGC-GCUgCGCCUggCGUg -3' miRNA: 3'- cacUCAGUGCCGuUGGgGUGGAa-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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