miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5512 3' -58.4 NC_001798.1 + 132146 0.69 0.663539
Target:  5'- -cGCCGGGggccgGCGGGCggggcgccccccCCGGACGc-- -3'
miRNA:   3'- gaCGGCCCa----UGCCCGa-----------GGUCUGCuuc -5'
5512 3' -58.4 NC_001798.1 + 111812 0.69 0.655541
Target:  5'- -cGCCGGucGCGGGCgUCCAGgggcuggcGCGggGc -3'
miRNA:   3'- gaCGGCCcaUGCCCG-AGGUC--------UGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 139156 0.69 0.655541
Target:  5'- gCUGUCGGGUgGCGGccucGCUggaCCGGACGAc- -3'
miRNA:   3'- -GACGGCCCA-UGCC----CGA---GGUCUGCUuc -5'
5512 3' -58.4 NC_001798.1 + 136601 0.69 0.655541
Target:  5'- gUGCgGGGgACGGGC-CCGGGCa--- -3'
miRNA:   3'- gACGgCCCaUGCCCGaGGUCUGcuuc -5'
5512 3' -58.4 NC_001798.1 + 79053 0.69 0.635505
Target:  5'- gUGUCGGGgcUGCGGGC-CCAGcCGGc- -3'
miRNA:   3'- gACGGCCC--AUGCCCGaGGUCuGCUuc -5'
5512 3' -58.4 NC_001798.1 + 30983 0.7 0.625479
Target:  5'- -gGCgGGGgucggGCGGGggUCGGGCGggGg -3'
miRNA:   3'- gaCGgCCCa----UGCCCgaGGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 31016 0.7 0.625479
Target:  5'- -gGCgGGGgucggGCGGGggUCGGGCGggGg -3'
miRNA:   3'- gaCGgCCCa----UGCCCgaGGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 27571 0.7 0.625479
Target:  5'- -cGCgGGGgagcgGCcGGCUCCGGGgGAGGg -3'
miRNA:   3'- gaCGgCCCa----UGcCCGAGGUCUgCUUC- -5'
5512 3' -58.4 NC_001798.1 + 36414 0.7 0.625479
Target:  5'- cCUGCCGGGcg-GGGCggUgGGGCGggGu -3'
miRNA:   3'- -GACGGCCCaugCCCGa-GgUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 6359 0.7 0.605449
Target:  5'- -gGCCGGGgggACGGGCcggggggCCGGGgggcCGggGg -3'
miRNA:   3'- gaCGGCCCa--UGCCCGa------GGUCU----GCuuC- -5'
5512 3' -58.4 NC_001798.1 + 4098 0.7 0.585495
Target:  5'- -gGCCGGG-GCGGGCUCggcccUGGGCGGGc -3'
miRNA:   3'- gaCGGCCCaUGCCCGAG-----GUCUGCUUc -5'
5512 3' -58.4 NC_001798.1 + 2990 0.7 0.585495
Target:  5'- -gGCCGGcccGCGGGCcCCGGGCGcGGg -3'
miRNA:   3'- gaCGGCCca-UGCCCGaGGUCUGCuUC- -5'
5512 3' -58.4 NC_001798.1 + 102463 0.7 0.575563
Target:  5'- --cCCGGGUACGGGUgggCgGGAgGAGGc -3'
miRNA:   3'- gacGGCCCAUGCCCGa--GgUCUgCUUC- -5'
5512 3' -58.4 NC_001798.1 + 122129 0.71 0.5266
Target:  5'- -aGCCGGGggggccccCGGGC-CgCGGGCGAGGa -3'
miRNA:   3'- gaCGGCCCau------GCCCGaG-GUCUGCUUC- -5'
5512 3' -58.4 NC_001798.1 + 149453 0.72 0.479283
Target:  5'- -aGCaGGGUGCGgcGGCUCCAcGCGggGg -3'
miRNA:   3'- gaCGgCCCAUGC--CCGAGGUcUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 147485 0.73 0.451911
Target:  5'- -cGCCGGGggACccaGGCUCCGGGgGggGg -3'
miRNA:   3'- gaCGGCCCa-UGc--CCGAGGUCUgCuuC- -5'
5512 3' -58.4 NC_001798.1 + 30950 0.73 0.451911
Target:  5'- -gGCgGGGgGCGGGCgggggUCGGGCGggGg -3'
miRNA:   3'- gaCGgCCCaUGCCCGa----GGUCUGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 153332 0.73 0.442977
Target:  5'- -aGCuCGGGccuCGGGCUCCAGGCa--- -3'
miRNA:   3'- gaCG-GCCCau-GCCCGAGGUCUGcuuc -5'
5512 3' -58.4 NC_001798.1 + 34979 0.73 0.408274
Target:  5'- -cGCCGaGGUGCGGGggcccCUCCGGcCGggGc -3'
miRNA:   3'- gaCGGC-CCAUGCCC-----GAGGUCuGCuuC- -5'
5512 3' -58.4 NC_001798.1 + 8787 0.73 0.408274
Target:  5'- uCUGCCGGG-ACGGGCgaggCC--GCGggGu -3'
miRNA:   3'- -GACGGCCCaUGCCCGa---GGucUGCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.