Results 1 - 20 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5513 | 3' | -55.6 | NC_001798.1 | + | 85151 | 0.66 | 0.929503 |
Target: 5'- aCGAgGCccuGUGCGCCGAGCuccuGGCgGCCu- -3' miRNA: 3'- aGCUgCG---CACGCGGUUUG----UCG-UGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 77732 | 0.66 | 0.929503 |
Target: 5'- gUCGAgGCG-GCGCUggaccgcgucgaGAACcGCGCCGa -3' miRNA: 3'- -AGCUgCGCaCGCGG------------UUUGuCGUGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 11453 | 0.66 | 0.929503 |
Target: 5'- cUGGcCGCGgggGCGCCuguauCGGCGCUGGc -3' miRNA: 3'- aGCU-GCGCa--CGCGGuuu--GUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 150430 | 0.66 | 0.929503 |
Target: 5'- gCGGCGCGggGCGgacuCCGGAC-GCGCgGGg -3' miRNA: 3'- aGCUGCGCa-CGC----GGUUUGuCGUGgUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 147985 | 0.66 | 0.929503 |
Target: 5'- -aGGCGCGUGC-CCGGccACAGC-CguGg -3' miRNA: 3'- agCUGCGCACGcGGUU--UGUCGuGguC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 130781 | 0.66 | 0.929503 |
Target: 5'- aCGAUG-GUGCGUC----GGCGCCGGg -3' miRNA: 3'- aGCUGCgCACGCGGuuugUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 146594 | 0.66 | 0.929503 |
Target: 5'- aCGGgcCGCG-GCGCC-AGCGGC-CCAc -3' miRNA: 3'- aGCU--GCGCaCGCGGuUUGUCGuGGUc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 135341 | 0.66 | 0.926328 |
Target: 5'- -gGACGCGUGCGaCGccugccccgcgcuccGGCAGCugCu- -3' miRNA: 3'- agCUGCGCACGCgGU---------------UUGUCGugGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 122897 | 0.66 | 0.924163 |
Target: 5'- cCGACGCccacuacGCGUUugacuacuACAGCACCAGc -3' miRNA: 3'- aGCUGCGca-----CGCGGuu------UGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 78154 | 0.66 | 0.924163 |
Target: 5'- aCGA-GCGUGC-CCGGcCuGCGCCGGu -3' miRNA: 3'- aGCUgCGCACGcGGUUuGuCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 36306 | 0.66 | 0.924163 |
Target: 5'- gUGugGCGgcgggGCGCgGGcCGGgGCCGGg -3' miRNA: 3'- aGCugCGCa----CGCGgUUuGUCgUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 65534 | 0.66 | 0.924163 |
Target: 5'- -gGugGCGgaucagGCGCUugaaGAACAGguCCGGc -3' miRNA: 3'- agCugCGCa-----CGCGG----UUUGUCguGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 108639 | 0.66 | 0.924163 |
Target: 5'- aCGACGgG-GCGaCCGAGaGGCAcCCGGa -3' miRNA: 3'- aGCUGCgCaCGC-GGUUUgUCGU-GGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 115853 | 0.66 | 0.924163 |
Target: 5'- cUCGGCGUugGcCGCCAcGCcauGGCGCCGGc -3' miRNA: 3'- -AGCUGCGcaC-GCGGUuUG---UCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 138426 | 0.66 | 0.924163 |
Target: 5'- cUCGcuguCGCucuUGCGCCccAACAGCACCu- -3' miRNA: 3'- -AGCu---GCGc--ACGCGGu-UUGUCGUGGuc -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 24750 | 0.66 | 0.924163 |
Target: 5'- cCGACGCGccccgccugcGCGCCuGGCuGCGCgAGc -3' miRNA: 3'- aGCUGCGCa---------CGCGGuUUGuCGUGgUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 51166 | 0.66 | 0.924163 |
Target: 5'- cCGACGCGcguccgagGC-CCGGGCGGCggcgcccccccGCCGGg -3' miRNA: 3'- aGCUGCGCa-------CGcGGUUUGUCG-----------UGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 111835 | 0.66 | 0.924163 |
Target: 5'- cUGGCGCGgggcgggaaUGcCGUCAAACAGgccgcuCACCAGg -3' miRNA: 3'- aGCUGCGC---------AC-GCGGUUUGUC------GUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 150191 | 0.66 | 0.924163 |
Target: 5'- ---cCGCG-GCGUgGggGGCGGCACCGGg -3' miRNA: 3'- agcuGCGCaCGCGgU--UUGUCGUGGUC- -5' |
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5513 | 3' | -55.6 | NC_001798.1 | + | 153071 | 0.66 | 0.924163 |
Target: 5'- cUGGgGCGggcggaGCgGCgGGGCGGCGCCGGg -3' miRNA: 3'- aGCUgCGCa-----CG-CGgUUUGUCGUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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