miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 146594 0.66 0.929503
Target:  5'- aCGGgcCGCG-GCGCC-AGCGGC-CCAc -3'
miRNA:   3'- aGCU--GCGCaCGCGGuUUGUCGuGGUc -5'
5513 3' -55.6 NC_001798.1 + 85151 0.66 0.929503
Target:  5'- aCGAgGCccuGUGCGCCGAGCuccuGGCgGCCu- -3'
miRNA:   3'- aGCUgCG---CACGCGGUUUG----UCG-UGGuc -5'
5513 3' -55.6 NC_001798.1 + 77732 0.66 0.929503
Target:  5'- gUCGAgGCG-GCGCUggaccgcgucgaGAACcGCGCCGa -3'
miRNA:   3'- -AGCUgCGCaCGCGG------------UUUGuCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 11453 0.66 0.929503
Target:  5'- cUGGcCGCGgggGCGCCuguauCGGCGCUGGc -3'
miRNA:   3'- aGCU-GCGCa--CGCGGuuu--GUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 150430 0.66 0.929503
Target:  5'- gCGGCGCGggGCGgacuCCGGAC-GCGCgGGg -3'
miRNA:   3'- aGCUGCGCa-CGC----GGUUUGuCGUGgUC- -5'
5513 3' -55.6 NC_001798.1 + 147985 0.66 0.929503
Target:  5'- -aGGCGCGUGC-CCGGccACAGC-CguGg -3'
miRNA:   3'- agCUGCGCACGcGGUU--UGUCGuGguC- -5'
5513 3' -55.6 NC_001798.1 + 130781 0.66 0.929503
Target:  5'- aCGAUG-GUGCGUC----GGCGCCGGg -3'
miRNA:   3'- aGCUGCgCACGCGGuuugUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 135341 0.66 0.926328
Target:  5'- -gGACGCGUGCGaCGccugccccgcgcuccGGCAGCugCu- -3'
miRNA:   3'- agCUGCGCACGCgGU---------------UUGUCGugGuc -5'
5513 3' -55.6 NC_001798.1 + 78154 0.66 0.924163
Target:  5'- aCGA-GCGUGC-CCGGcCuGCGCCGGu -3'
miRNA:   3'- aGCUgCGCACGcGGUUuGuCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 36306 0.66 0.924163
Target:  5'- gUGugGCGgcgggGCGCgGGcCGGgGCCGGg -3'
miRNA:   3'- aGCugCGCa----CGCGgUUuGUCgUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 65534 0.66 0.924163
Target:  5'- -gGugGCGgaucagGCGCUugaaGAACAGguCCGGc -3'
miRNA:   3'- agCugCGCa-----CGCGG----UUUGUCguGGUC- -5'
5513 3' -55.6 NC_001798.1 + 108639 0.66 0.924163
Target:  5'- aCGACGgG-GCGaCCGAGaGGCAcCCGGa -3'
miRNA:   3'- aGCUGCgCaCGC-GGUUUgUCGU-GGUC- -5'
5513 3' -55.6 NC_001798.1 + 115853 0.66 0.924163
Target:  5'- cUCGGCGUugGcCGCCAcGCcauGGCGCCGGc -3'
miRNA:   3'- -AGCUGCGcaC-GCGGUuUG---UCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 138426 0.66 0.924163
Target:  5'- cUCGcuguCGCucuUGCGCCccAACAGCACCu- -3'
miRNA:   3'- -AGCu---GCGc--ACGCGGu-UUGUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 24750 0.66 0.924163
Target:  5'- cCGACGCGccccgccugcGCGCCuGGCuGCGCgAGc -3'
miRNA:   3'- aGCUGCGCa---------CGCGGuUUGuCGUGgUC- -5'
5513 3' -55.6 NC_001798.1 + 51166 0.66 0.924163
Target:  5'- cCGACGCGcguccgagGC-CCGGGCGGCggcgcccccccGCCGGg -3'
miRNA:   3'- aGCUGCGCa-------CGcGGUUUGUCG-----------UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 111835 0.66 0.924163
Target:  5'- cUGGCGCGgggcgggaaUGcCGUCAAACAGgccgcuCACCAGg -3'
miRNA:   3'- aGCUGCGC---------AC-GCGGUUUGUC------GUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 122897 0.66 0.924163
Target:  5'- cCGACGCccacuacGCGUUugacuacuACAGCACCAGc -3'
miRNA:   3'- aGCUGCGca-----CGCGGuu------UGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 150191 0.66 0.924163
Target:  5'- ---cCGCG-GCGUgGggGGCGGCACCGGg -3'
miRNA:   3'- agcuGCGCaCGCGgU--UUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 153071 0.66 0.924163
Target:  5'- cUGGgGCGggcggaGCgGCgGGGCGGCGCCGGg -3'
miRNA:   3'- aGCUgCGCa-----CG-CGgUUUGUCGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.