miRNA display CGI


Results 61 - 80 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 11757 0.69 0.80797
Target:  5'- -aGGCGCG-GgGCCGAaaagggaaGCuGCGCCGGa -3'
miRNA:   3'- agCUGCGCaCgCGGUU--------UGuCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 40161 0.68 0.814122
Target:  5'- -gGGCGCGUGUcggaagagagugGCCGgguccgaaucgaggAGCGGCACCGa -3'
miRNA:   3'- agCUGCGCACG------------CGGU--------------UUGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 35145 0.68 0.816734
Target:  5'- -gGGCGCGccggUGCGCgGAGCAGCcuuccuucuCCGGa -3'
miRNA:   3'- agCUGCGC----ACGCGgUUUGUCGu--------GGUC- -5'
5513 3' -55.6 NC_001798.1 + 3217 0.68 0.825329
Target:  5'- -gGGCGCG-GCGCuCAGGC-GCcCCAGg -3'
miRNA:   3'- agCUGCGCaCGCG-GUUUGuCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 51252 0.68 0.825329
Target:  5'- cCGuuCGCG-GaCGCCgGGACAGCGCCAu -3'
miRNA:   3'- aGCu-GCGCaC-GCGG-UUUGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 23746 0.68 0.825329
Target:  5'- cCGACGCGgccuccgGCGCCuucuACGcGCGCUAc -3'
miRNA:   3'- aGCUGCGCa------CGCGGuu--UGU-CGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 53286 0.68 0.825329
Target:  5'- cCGGCGUuucugaccgGCGCCGAucGCAGCGuCCGGc -3'
miRNA:   3'- aGCUGCGca-------CGCGGUU--UGUCGU-GGUC- -5'
5513 3' -55.6 NC_001798.1 + 120704 0.68 0.825329
Target:  5'- aUCGGC-CGUcCGgCGAACGGCGCCGu -3'
miRNA:   3'- -AGCUGcGCAcGCgGUUUGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 53133 0.68 0.825329
Target:  5'- cUGGCGCgGUGCcugacgccgGCCAAccucauccGCGGCGCCAa -3'
miRNA:   3'- aGCUGCG-CACG---------CGGUU--------UGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 129666 0.68 0.826179
Target:  5'- cCGACGUGcgcguggucacccggGCGCCGGGgcccCAGUACCGGc -3'
miRNA:   3'- aGCUGCGCa--------------CGCGGUUU----GUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 116798 0.68 0.832913
Target:  5'- cCGACGCGgGCGCCAAcACcGCgucgacgGCCAa -3'
miRNA:   3'- aGCUGCGCaCGCGGUU-UGuCG-------UGGUc -5'
5513 3' -55.6 NC_001798.1 + 54545 0.68 0.833746
Target:  5'- gUCGACGCGgccgaccgggGUcCCGAGCccuGCGCCGGc -3'
miRNA:   3'- -AGCUGCGCa---------CGcGGUUUGu--CGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 113628 0.68 0.84198
Target:  5'- aUCGccuGCGCGgccgGCGCCGccauguggguGGCGGCGgCGGa -3'
miRNA:   3'- -AGC---UGCGCa---CGCGGU----------UUGUCGUgGUC- -5'
5513 3' -55.6 NC_001798.1 + 97273 0.68 0.84198
Target:  5'- aUCG-CGCGUucggGgGCCAccuGGCGGCGCUGGa -3'
miRNA:   3'- -AGCuGCGCA----CgCGGU---UUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 136880 0.68 0.84198
Target:  5'- gCGugGCGUG-GCUccggGGACAGUucuCCAGg -3'
miRNA:   3'- aGCugCGCACgCGG----UUUGUCGu--GGUC- -5'
5513 3' -55.6 NC_001798.1 + 134936 0.68 0.849226
Target:  5'- gUCGGCGCGUgaccuggugcgggGCGCC--GCGGcCACCc- -3'
miRNA:   3'- -AGCUGCGCA-------------CGCGGuuUGUC-GUGGuc -5'
5513 3' -55.6 NC_001798.1 + 105418 0.68 0.850021
Target:  5'- gCGGcCGCgGUGCGCUGGgccuGCAGCACUg- -3'
miRNA:   3'- aGCU-GCG-CACGCGGUU----UGUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 16840 0.68 0.850021
Target:  5'- gCGAUgGCGUGCaugacGCCGGGCGGCaagguGCCAa -3'
miRNA:   3'- aGCUG-CGCACG-----CGGUUUGUCG-----UGGUc -5'
5513 3' -55.6 NC_001798.1 + 70066 0.67 0.857864
Target:  5'- gCGcCGCGU-CGCCGAGCGcGCacGCCGGu -3'
miRNA:   3'- aGCuGCGCAcGCGGUUUGU-CG--UGGUC- -5'
5513 3' -55.6 NC_001798.1 + 5297 0.67 0.857864
Target:  5'- aUCGACGCcgccGCGCCc--CGGCucGCCGGg -3'
miRNA:   3'- -AGCUGCGca--CGCGGuuuGUCG--UGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.