miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 3' -55.6 NC_001798.1 + 154077 0.69 0.798145
Target:  5'- -gGGCGCGgcacggcuggaGCGCCGGGgcgcggcCGGCGCCGGg -3'
miRNA:   3'- agCUGCGCa----------CGCGGUUU-------GUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 153735 0.71 0.662297
Target:  5'- gUCGugGUGcGCaGCCG--UAGCGCCAGg -3'
miRNA:   3'- -AGCugCGCaCG-CGGUuuGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 153687 0.66 0.900409
Target:  5'- -gGACGCGgggGcCGCCGccGGCGcaggcucaggcGCGCCAGg -3'
miRNA:   3'- agCUGCGCa--C-GCGGU--UUGU-----------CGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 153371 0.7 0.722941
Target:  5'- cUCGGC-CGc-CGCCAcGCGGCGCCGGa -3'
miRNA:   3'- -AGCUGcGCacGCGGUuUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 153071 0.66 0.924163
Target:  5'- cUGGgGCGggcggaGCgGCgGGGCGGCGCCGGg -3'
miRNA:   3'- aGCUgCGCa-----CG-CGgUUUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 150833 0.74 0.491057
Target:  5'- ---cCGCGggGCGCCAGGgGGCGCCGGu -3'
miRNA:   3'- agcuGCGCa-CGCGGUUUgUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 150430 0.66 0.929503
Target:  5'- gCGGCGCGggGCGgacuCCGGAC-GCGCgGGg -3'
miRNA:   3'- aGCUGCGCa-CGC----GGUUUGuCGUGgUC- -5'
5513 3' -55.6 NC_001798.1 + 150191 0.66 0.924163
Target:  5'- ---cCGCG-GCGUgGggGGCGGCACCGGg -3'
miRNA:   3'- agcuGCGCaCGCGgU--UUGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 149982 0.72 0.600754
Target:  5'- -gGGCGCG-GCGCCc-GCGGaCGCCGGg -3'
miRNA:   3'- agCUGCGCaCGCGGuuUGUC-GUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 149649 0.66 0.912763
Target:  5'- --aGCGCGUGagGCCG---GGCGCCGGg -3'
miRNA:   3'- agcUGCGCACg-CGGUuugUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 149394 0.66 0.912763
Target:  5'- cCGACGCGggggGCGUCGggUAGUcgggggGCCu- -3'
miRNA:   3'- aGCUGCGCa---CGCGGUuuGUCG------UGGuc -5'
5513 3' -55.6 NC_001798.1 + 147985 0.66 0.929503
Target:  5'- -aGGCGCGUGC-CCGGccACAGC-CguGg -3'
miRNA:   3'- agCUGCGCACGcGGUU--UGUCGuGguC- -5'
5513 3' -55.6 NC_001798.1 + 146594 0.66 0.929503
Target:  5'- aCGGgcCGCG-GCGCC-AGCGGC-CCAc -3'
miRNA:   3'- aGCU--GCGCaCGCGGuUUGUCGuGGUc -5'
5513 3' -55.6 NC_001798.1 + 146449 0.71 0.652053
Target:  5'- cCGGagccCGCGgccGCaGCCGAGCAGCGCCGc -3'
miRNA:   3'- aGCU----GCGCa--CG-CGGUUUGUCGUGGUc -5'
5513 3' -55.6 NC_001798.1 + 144332 0.67 0.880134
Target:  5'- gCGGCGuCGcauCGCCcGACAGCcCCAGg -3'
miRNA:   3'- aGCUGC-GCac-GCGGuUUGUCGuGGUC- -5'
5513 3' -55.6 NC_001798.1 + 142188 0.74 0.530087
Target:  5'- cUGACGCG-GgGUCGAGC-GCGCCAGg -3'
miRNA:   3'- aGCUGCGCaCgCGGUUUGuCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 139333 0.67 0.865501
Target:  5'- cCGGCGCccgcgcgcgcuGUGCgGCCAuGGCGGCGuCCGGc -3'
miRNA:   3'- aGCUGCG-----------CACG-CGGU-UUGUCGU-GGUC- -5'
5513 3' -55.6 NC_001798.1 + 138552 0.67 0.89652
Target:  5'- aUCGAagaccagGCG-GuCGCCGGuccacaggggggggcACAGCACCAGg -3'
miRNA:   3'- -AGCUg------CGCaC-GCGGUU---------------UGUCGUGGUC- -5'
5513 3' -55.6 NC_001798.1 + 138426 0.66 0.924163
Target:  5'- cUCGcuguCGCucuUGCGCCccAACAGCACCu- -3'
miRNA:   3'- -AGCu---GCGc--ACGCGGu-UUGUCGUGGuc -5'
5513 3' -55.6 NC_001798.1 + 136880 0.68 0.84198
Target:  5'- gCGugGCGUG-GCUccggGGACAGUucuCCAGg -3'
miRNA:   3'- aGCugCGCACgCGG----UUUGUCGu--GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.