miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5513 5' -53.3 NC_001798.1 + 149635 0.66 0.96857
Target:  5'- cGCgAUgGGCAGGUaGcGCGUGaGGCc -3'
miRNA:   3'- aCGgUAgUCGUCCAgCaCGUAUaCCG- -5'
5513 5' -53.3 NC_001798.1 + 153818 0.66 0.965346
Target:  5'- gGCgG-CGGCAGGcgcggCGUGCGg--GGCc -3'
miRNA:   3'- aCGgUaGUCGUCCa----GCACGUauaCCG- -5'
5513 5' -53.3 NC_001798.1 + 76004 0.66 0.962251
Target:  5'- cGCCggCGGCAGGgcccCGUGCccgcccgcccugGGCc -3'
miRNA:   3'- aCGGuaGUCGUCCa---GCACGuaua--------CCG- -5'
5513 5' -53.3 NC_001798.1 + 2300 0.66 0.961896
Target:  5'- gGCCAgcgCGcGCGGGUCGaaCAUGagGGCc -3'
miRNA:   3'- aCGGUa--GU-CGUCCAGCacGUAUa-CCG- -5'
5513 5' -53.3 NC_001798.1 + 39997 0.66 0.961896
Target:  5'- cUGCUGUCGGacucgGGGUCGUcGCGgc-GGCc -3'
miRNA:   3'- -ACGGUAGUCg----UCCAGCA-CGUauaCCG- -5'
5513 5' -53.3 NC_001798.1 + 95393 0.66 0.961896
Target:  5'- gGUCGcCAGCAG--CGUGUuUGUGGCg -3'
miRNA:   3'- aCGGUaGUCGUCcaGCACGuAUACCG- -5'
5513 5' -53.3 NC_001798.1 + 101831 0.66 0.961896
Target:  5'- aGCUcgCGGCGGGgggaggCGUGgGUcccGGCg -3'
miRNA:   3'- aCGGuaGUCGUCCa-----GCACgUAua-CCG- -5'
5513 5' -53.3 NC_001798.1 + 36279 0.66 0.961896
Target:  5'- gGUgGgCGGCGGGggggggugcCGUGgGUGUGGCg -3'
miRNA:   3'- aCGgUaGUCGUCCa--------GCACgUAUACCG- -5'
5513 5' -53.3 NC_001798.1 + 13608 0.66 0.958215
Target:  5'- gGCCAUCuuaAGCgagGGGUCugcuaagGCGUAuuUGGCg -3'
miRNA:   3'- aCGGUAG---UCG---UCCAGca-----CGUAU--ACCG- -5'
5513 5' -53.3 NC_001798.1 + 97103 0.66 0.958215
Target:  5'- cGCCAUCAGCGagcugcgcuucuGGcUG-GCGUccGGCg -3'
miRNA:   3'- aCGGUAGUCGU------------CCaGCaCGUAuaCCG- -5'
5513 5' -53.3 NC_001798.1 + 14041 0.66 0.958215
Target:  5'- aUGCC--CGGCAcGGg---GCGUGUGGCg -3'
miRNA:   3'- -ACGGuaGUCGU-CCagcaCGUAUACCG- -5'
5513 5' -53.3 NC_001798.1 + 16633 0.66 0.958215
Target:  5'- cGCCGg-GGCAGGUCuUGCcgcccGGCg -3'
miRNA:   3'- aCGGUagUCGUCCAGcACGuaua-CCG- -5'
5513 5' -53.3 NC_001798.1 + 65022 0.66 0.958215
Target:  5'- cGCCGUguGCAGGcCcUGCAUgccaaugcccAUGGa -3'
miRNA:   3'- aCGGUAguCGUCCaGcACGUA----------UACCg -5'
5513 5' -53.3 NC_001798.1 + 2949 0.66 0.95014
Target:  5'- aGCCAggcgcgcaGGCGGGgcgCGUcgGCGUGcGGCg -3'
miRNA:   3'- aCGGUag------UCGUCCa--GCA--CGUAUaCCG- -5'
5513 5' -53.3 NC_001798.1 + 69000 0.67 0.941086
Target:  5'- cGCC-UCGGCGGcGUCGcgcGCAUcGUaGGCg -3'
miRNA:   3'- aCGGuAGUCGUC-CAGCa--CGUA-UA-CCG- -5'
5513 5' -53.3 NC_001798.1 + 9169 0.67 0.936184
Target:  5'- cGCCGgggggcagggucUCuGGCGGGUccccgCGUGCGUccgcgAUGGCa -3'
miRNA:   3'- aCGGU------------AG-UCGUCCA-----GCACGUA-----UACCG- -5'
5513 5' -53.3 NC_001798.1 + 52578 0.67 0.936184
Target:  5'- gGCCGaCAcGguGGUCGcgUGCGUGgcccUGGCc -3'
miRNA:   3'- aCGGUaGU-CguCCAGC--ACGUAU----ACCG- -5'
5513 5' -53.3 NC_001798.1 + 68969 0.67 0.931031
Target:  5'- cGCCGU-AGUuGGUCGUG-AUGUGGg -3'
miRNA:   3'- aCGGUAgUCGuCCAGCACgUAUACCg -5'
5513 5' -53.3 NC_001798.1 + 109522 0.67 0.929435
Target:  5'- gGCUAUCAGCuGGcguUCGUGUugGacagccccgcggccUAUGGCg -3'
miRNA:   3'- aCGGUAGUCGuCC---AGCACG--U--------------AUACCG- -5'
5513 5' -53.3 NC_001798.1 + 102773 0.67 0.925624
Target:  5'- cGCUcgCGGCGGGggaUGUGUc-AUGGCa -3'
miRNA:   3'- aCGGuaGUCGUCCa--GCACGuaUACCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.