miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5514 5' -58.9 NC_001798.1 + 154407 0.66 0.768645
Target:  5'- ----gGCGGGCGGCGgcgGCGGGcggGCg -3'
miRNA:   3'- ccaggCGCCCGUCGUagaCGUCCa--CG- -5'
5514 5' -58.9 NC_001798.1 + 153803 0.67 0.721149
Target:  5'- cGG-CgGCGGGgGGCAggcggCgGCAGGcGCg -3'
miRNA:   3'- -CCaGgCGCCCgUCGUa----GaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 153674 0.73 0.404817
Target:  5'- cGUCCGCGGGCGGgGaC-GCGGGgGCc -3'
miRNA:   3'- cCAGGCGCCCGUCgUaGaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 152226 0.66 0.786885
Target:  5'- gGGUCUGcCGcGGCGGCcgCU-CGGG-GCc -3'
miRNA:   3'- -CCAGGC-GC-CCGUCGuaGAcGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 150859 0.67 0.759345
Target:  5'- gGGUCgCgGCGGGCugggAGguUCcGCGGGUcGCc -3'
miRNA:   3'- -CCAG-G-CGCCCG----UCguAGaCGUCCA-CG- -5'
5514 5' -58.9 NC_001798.1 + 149735 0.69 0.601646
Target:  5'- --cCCGCGGcGCAGCAgc-GCGGGgGCc -3'
miRNA:   3'- ccaGGCGCC-CGUCGUagaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 149240 0.69 0.621694
Target:  5'- uGGcCCGCGGG-GGCGUCgccggccggcGCGGGcGCg -3'
miRNA:   3'- -CCaGGCGCCCgUCGUAGa---------CGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 148431 0.69 0.641772
Target:  5'- cGGgg-GUGGGCacgGGCGUaagUGCGGGUGCa -3'
miRNA:   3'- -CCaggCGCCCG---UCGUAg--ACGUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 148384 0.67 0.73083
Target:  5'- aGGg--GCGGGCguGGCGg--GCAGGUGUg -3'
miRNA:   3'- -CCaggCGCCCG--UCGUagaCGUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 148296 0.7 0.561863
Target:  5'- aGGUgUGCGGGCGGgGUggGguGaGUGCg -3'
miRNA:   3'- -CCAgGCGCCCGUCgUAgaCguC-CACG- -5'
5514 5' -58.9 NC_001798.1 + 147160 0.66 0.813221
Target:  5'- gGGUCC-CGGGUAGCcgCccgGCGccGG-GCg -3'
miRNA:   3'- -CCAGGcGCCCGUCGuaGa--CGU--CCaCG- -5'
5514 5' -58.9 NC_001798.1 + 146558 0.69 0.631733
Target:  5'- uGG-CCGCGGGcCAGCAgacgggCcGCGGGccaGCa -3'
miRNA:   3'- -CCaGGCGCCC-GUCGUa-----GaCGUCCa--CG- -5'
5514 5' -58.9 NC_001798.1 + 145787 0.73 0.396444
Target:  5'- gGGUCCacacaggagcgcGCGGGCGGCAgaaacGCGGGcGCg -3'
miRNA:   3'- -CCAGG------------CGCCCGUCGUaga--CGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 136596 0.67 0.725031
Target:  5'- aGUCCGUgcgggggacGGGCccgGGCAacugcaacgcagagcUCUGCGGGgugGCg -3'
miRNA:   3'- cCAGGCG---------CCCG---UCGU---------------AGACGUCCa--CG- -5'
5514 5' -58.9 NC_001798.1 + 135442 0.68 0.671814
Target:  5'- cGGUCUGC-GGCGGCAccggggcugcguUCUGgGGGcUGUu -3'
miRNA:   3'- -CCAGGCGcCCGUCGU------------AGACgUCC-ACG- -5'
5514 5' -58.9 NC_001798.1 + 134659 0.68 0.6917
Target:  5'- cGGccCCGCGGacacccGCAGCggGUCacggcGCGGGUGCu -3'
miRNA:   3'- -CCa-GGCGCC------CGUCG--UAGa----CGUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 116710 0.67 0.711395
Target:  5'- cGUCguCGaCGGGCccgccauGCucacgCUGCAGGUGCu -3'
miRNA:   3'- cCAG--GC-GCCCGu------CGua---GACGUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 114866 0.67 0.73083
Target:  5'- ---gCGCGGGCGGCcgGUCgacgGGGUGCu -3'
miRNA:   3'- ccagGCGCCCGUCG--UAGacg-UCCACG- -5'
5514 5' -58.9 NC_001798.1 + 113320 0.68 0.681777
Target:  5'- uGG-CCGCGGGCAuGUAUUa-CGGGUGg -3'
miRNA:   3'- -CCaGGCGCCCGU-CGUAGacGUCCACg -5'
5514 5' -58.9 NC_001798.1 + 108835 0.68 0.681777
Target:  5'- uGGcCCGUGGGCgucuggacgacgGGCGggCUGgcguuCGGGUGCg -3'
miRNA:   3'- -CCaGGCGCCCG------------UCGUa-GAC-----GUCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.