miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5516 3' -70 NC_001798.1 + 154557 0.7 0.176751
Target:  5'- uUCCCgCGCCCG-CCCCC--GCgCGGCa -3'
miRNA:   3'- cAGGGgGCGGGCaGGGGGgcCG-GCCG- -5'
5516 3' -70 NC_001798.1 + 154483 0.7 0.184972
Target:  5'- cUCCCCCgcgggcgccGCCCcUCCCCCCGcgcGCCgcggGGCu -3'
miRNA:   3'- cAGGGGG---------CGGGcAGGGGGGC---CGG----CCG- -5'
5516 3' -70 NC_001798.1 + 154454 0.78 0.045308
Target:  5'- cUUCCCCGUCCcUCCCCCgGaGCCGGCc -3'
miRNA:   3'- cAGGGGGCGGGcAGGGGGgC-CGGCCG- -5'
5516 3' -70 NC_001798.1 + 152614 0.78 0.044755
Target:  5'- -cCCCCCGCCgacgcagaugggaGUCCCCCCGGCgccccgcCGGCg -3'
miRNA:   3'- caGGGGGCGGg------------CAGGGGGGCCG-------GCCG- -5'
5516 3' -70 NC_001798.1 + 152496 0.68 0.263529
Target:  5'- uUCCCCCaauaGCCgCG-CgCCCCGGCgGGg -3'
miRNA:   3'- cAGGGGG----CGG-GCaGgGGGGCCGgCCg -5'
5516 3' -70 NC_001798.1 + 151990 0.67 0.293111
Target:  5'- cUCCCCC-CCUGUCCCCCgCucuCgGGCu -3'
miRNA:   3'- cAGGGGGcGGGCAGGGGG-Gcc-GgCCG- -5'
5516 3' -70 NC_001798.1 + 151860 0.71 0.157245
Target:  5'- -aCCCCCGCgCCGUgUCCCCCGuGucccucccucaccCCGGCc -3'
miRNA:   3'- caGGGGGCG-GGCA-GGGGGGC-C-------------GGCCG- -5'
5516 3' -70 NC_001798.1 + 151115 0.74 0.093909
Target:  5'- -aCCCCCGCCCG-CCCUCaccGUCGGCc -3'
miRNA:   3'- caGGGGGCGGGCaGGGGGgc-CGGCCG- -5'
5516 3' -70 NC_001798.1 + 151093 0.78 0.052492
Target:  5'- -aCCCCCGCCCG-CCCCCCGcCCGa- -3'
miRNA:   3'- caGGGGGCGGGCaGGGGGGCcGGCcg -5'
5516 3' -70 NC_001798.1 + 151060 0.71 0.172764
Target:  5'- -aCCCCCGCCCGa-CCCCCGcCCGa- -3'
miRNA:   3'- caGGGGGCGGGCagGGGGGCcGGCcg -5'
5516 3' -70 NC_001798.1 + 151038 0.71 0.172764
Target:  5'- -aCCCCCGCCCGa-CCCCCGcCCGa- -3'
miRNA:   3'- caGGGGGCGGGCagGGGGGCcGGCcg -5'
5516 3' -70 NC_001798.1 + 151016 0.71 0.172764
Target:  5'- -aCCCCCGCCCGa-CCCCCGcCCGa- -3'
miRNA:   3'- caGGGGGCGGGCagGGGGGCcGGCcg -5'
5516 3' -70 NC_001798.1 + 150994 0.71 0.172764
Target:  5'- -aCCCCCGCCCGa-CCCCCGcCCGa- -3'
miRNA:   3'- caGGGGGCGGGCagGGGGGCcGGCcg -5'
5516 3' -70 NC_001798.1 + 150891 0.77 0.056489
Target:  5'- -gCCCCCGCaCCGcCgCCCCCGcGCCGGg -3'
miRNA:   3'- caGGGGGCG-GGCaG-GGGGGC-CGGCCg -5'
5516 3' -70 NC_001798.1 + 150694 0.69 0.207011
Target:  5'- -aCCCgCgCGCCUGcgcgcgCCCCCCG-CCGGCc -3'
miRNA:   3'- caGGG-G-GCGGGCa-----GGGGGGCcGGCCG- -5'
5516 3' -70 NC_001798.1 + 149224 0.7 0.18082
Target:  5'- cUCCCCCuacuccccgugGCCCGcgggggCgUCgCCGGCCGGCg -3'
miRNA:   3'- cAGGGGG-----------CGGGCa-----GgGG-GGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 149147 0.74 0.100886
Target:  5'- cUCCCCCuGCCCccgaggCgCCUCGGCCGGUg -3'
miRNA:   3'- cAGGGGG-CGGGca----GgGGGGCCGGCCG- -5'
5516 3' -70 NC_001798.1 + 148894 0.69 0.236417
Target:  5'- uUCCCCCccaucCCCGgCCCCCCuGCgCGGg -3'
miRNA:   3'- cAGGGGGc----GGGCaGGGGGGcCG-GCCg -5'
5516 3' -70 NC_001798.1 + 148661 0.7 0.18082
Target:  5'- -aCUCCUGCCCaccaCCCCCagggucuGGCCGGCc -3'
miRNA:   3'- caGGGGGCGGGca--GGGGGg------CCGGCCG- -5'
5516 3' -70 NC_001798.1 + 148622 0.67 0.312073
Target:  5'- -aCCCCC-CCCcUCCucccuCCCCGaGCCaGGCg -3'
miRNA:   3'- caGGGGGcGGGcAGG-----GGGGC-CGG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.