Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5517 | 3' | -55.4 | NC_001798.1 | + | 103744 | 0.66 | 0.897127 |
Target: 5'- ----cGGGCCGGgacuaaaGCCCGCGUUUCg -3' miRNA: 3'- uuuucCUUGGCUacg----CGGGCGCAGAG- -5' |
|||||||
5517 | 3' | -55.4 | NC_001798.1 | + | 150386 | 0.66 | 0.897127 |
Target: 5'- ---cGGGcCCGGccGCGUCCGCG-CUCg -3' miRNA: 3'- uuuuCCUuGGCUa-CGCGGGCGCaGAG- -5' |
|||||||
5517 | 3' | -55.4 | NC_001798.1 | + | 137485 | 0.66 | 0.897127 |
Target: 5'- gGAGGGGGGCCGggGCaGagCCGCGUgCUg -3' miRNA: 3'- -UUUUCCUUGGCuaCG-Cg-GGCGCA-GAg -5' |
|||||||
5517 | 3' | -55.4 | NC_001798.1 | + | 39415 | 0.66 | 0.897127 |
Target: 5'- ---cGGGACCGggGCGCggccguCCGCGUg-- -3' miRNA: 3'- uuuuCCUUGGCuaCGCG------GGCGCAgag -5' |
|||||||
5517 | 3' | -55.4 | NC_001798.1 | + | 47607 | 0.66 | 0.897127 |
Target: 5'- -cGAGGAGCUGuacuAUG-GCCCG-GUCUCc -3' miRNA: 3'- uuUUCCUUGGC----UACgCGGGCgCAGAG- -5' |
|||||||
5517 | 3' | -55.4 | NC_001798.1 | + | 47862 | 0.66 | 0.890408 |
Target: 5'- --cGGGGGCCccguggGCGCCgGCGggcgCUCg -3' miRNA: 3'- uuuUCCUUGGcua---CGCGGgCGCa---GAG- -5' |
|||||||
5517 | 3' | -55.4 | NC_001798.1 | + | 25723 | 0.66 | 0.890408 |
Target: 5'- ----uGGACCGgcGCcCCCGaCGUCUCg -3' miRNA: 3'- uuuucCUUGGCuaCGcGGGC-GCAGAG- -5' |
|||||||
5517 | 3' | -55.4 | NC_001798.1 | + | 2575 | 0.66 | 0.890408 |
Target: 5'- ---cGGGGCgGGggGCGUCCGCGcggCUCu -3' miRNA: 3'- uuuuCCUUGgCUa-CGCGGGCGCa--GAG- -5' |
|||||||
5517 | 3' | -55.4 | NC_001798.1 | + | 79393 | 0.66 | 0.921605 |
Target: 5'- --cGGGcGCgGAguccGCGCCCGCGccccugCUCg -3' miRNA: 3'- uuuUCCuUGgCUa---CGCGGGCGCa-----GAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home