miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5517 5' -61.5 NC_001798.1 + 3886 0.66 0.752184
Target:  5'- gCGccCCGGGgGCGggGGgccgGCCCCGg -3'
miRNA:   3'- gGCuaGGCCCaCGCagCCa---CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 31891 0.66 0.705793
Target:  5'- cCCGGaagaggCgCGGGU-CGgacUCGG-GCCCCGCg -3'
miRNA:   3'- -GGCUa-----G-GCCCAcGC---AGCCaCGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 143358 0.66 0.714273
Target:  5'- cCCGGUCCGGcucuccgucgagaGgccccacgugcGCGUcCGGUGCggucCCCGCa -3'
miRNA:   3'- -GGCUAGGCC-------------Ca----------CGCA-GCCACG----GGGCG- -5'
5517 5' -61.5 NC_001798.1 + 106042 0.66 0.715213
Target:  5'- gCCGugccuUCCGGGUcacGUGUCGGggagggggGCCUuUGCg -3'
miRNA:   3'- -GGCu----AGGCCCA---CGCAGCCa-------CGGG-GCG- -5'
5517 5' -61.5 NC_001798.1 + 150852 0.66 0.715213
Target:  5'- gCCGGU-CGGGUcGCGgCGGgcugggagGUUCCGCg -3'
miRNA:   3'- -GGCUAgGCCCA-CGCaGCCa-------CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 150466 0.66 0.724569
Target:  5'- gCCGcgCgGGG-GCGcgCGGcgcGCCCCGa -3'
miRNA:   3'- -GGCuaGgCCCaCGCa-GCCa--CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 121994 0.66 0.724569
Target:  5'- gCGGccUCCGGcGUcGCcUCGGgGCUCCGCc -3'
miRNA:   3'- gGCU--AGGCC-CA-CGcAGCCaCGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 149393 0.66 0.724569
Target:  5'- uCCGAcgCGGGggGCGUCGGguagucgggggGCCUcaCGCa -3'
miRNA:   3'- -GGCUagGCCCa-CGCAGCCa----------CGGG--GCG- -5'
5517 5' -61.5 NC_001798.1 + 128085 0.66 0.728293
Target:  5'- cCCGAUgUGGucgGCGUCGGcgauccccaacgcacUGCCCCc- -3'
miRNA:   3'- -GGCUAgGCCca-CGCAGCC---------------ACGGGGcg -5'
5517 5' -61.5 NC_001798.1 + 37396 0.66 0.737548
Target:  5'- aCCGAgccaCCGGGcGgGUCcGUGgggccggccgaccaaCCCCGCg -3'
miRNA:   3'- -GGCUa---GGCCCaCgCAGcCAC---------------GGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 140203 0.66 0.740309
Target:  5'- gCCGGUgCUGGuGUGCGUgGgGUcgccgacccagacgGCCUCGCu -3'
miRNA:   3'- -GGCUA-GGCC-CACGCAgC-CA--------------CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 15416 0.66 0.743063
Target:  5'- gCgGGUCCGGGagGgGUuguuUGGgGCCCCGg -3'
miRNA:   3'- -GgCUAGGCCCa-CgCA----GCCaCGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 51815 0.66 0.743063
Target:  5'- gCGAUCaaCGGGUGgGUcugCGGgacGCgCCUGCa -3'
miRNA:   3'- gGCUAG--GCCCACgCA---GCCa--CG-GGGCG- -5'
5517 5' -61.5 NC_001798.1 + 2968 0.66 0.743063
Target:  5'- gCGcgUCGGcGUGCGgCGGggcgGCcggCCCGCg -3'
miRNA:   3'- gGCuaGGCC-CACGCaGCCa---CG---GGGCG- -5'
5517 5' -61.5 NC_001798.1 + 21798 0.66 0.743063
Target:  5'- cCCG-UCCGGGcccGCcUCGGgGCggagCCCGCg -3'
miRNA:   3'- -GGCuAGGCCCa--CGcAGCCaCG----GGGCG- -5'
5517 5' -61.5 NC_001798.1 + 83848 0.66 0.743063
Target:  5'- cCCG-UCCGGGcgGCGcuggCGG-GCCCgagGCg -3'
miRNA:   3'- -GGCuAGGCCCa-CGCa---GCCaCGGGg--CG- -5'
5517 5' -61.5 NC_001798.1 + 83886 0.66 0.743063
Target:  5'- cCCGGcCCGGGcGCuccggaagagUGGUGCgCCGCc -3'
miRNA:   3'- -GGCUaGGCCCaCGca--------GCCACGgGGCG- -5'
5517 5' -61.5 NC_001798.1 + 150341 0.66 0.751276
Target:  5'- gCGA-CCGGG-GCGcgCGGUGCgcguccaCCgGCa -3'
miRNA:   3'- gGCUaGGCCCaCGCa-GCCACG-------GGgCG- -5'
5517 5' -61.5 NC_001798.1 + 42680 0.66 0.752184
Target:  5'- cUCGucgCCGGGaccaccgGCGUCGGggaaccaGuCCCCGUc -3'
miRNA:   3'- -GGCua-GGCCCa------CGCAGCCa------C-GGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 148120 0.66 0.752184
Target:  5'- aCGcg-CGcGGUGUGUCGacuugcaUGCCCCGCa -3'
miRNA:   3'- gGCuagGC-CCACGCAGCc------ACGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.