miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5517 5' -61.5 NC_001798.1 + 21628 1.12 0.000807
Target:  5'- uCCGAUCCGGGUGCGUCGGUGCCCCGCu -3'
miRNA:   3'- -GGCUAGGCCCACGCAGCCACGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 84598 0.81 0.10357
Target:  5'- gUCGGUCCcGGUGC--CGGUGCCCCGCc -3'
miRNA:   3'- -GGCUAGGcCCACGcaGCCACGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 43259 0.77 0.185589
Target:  5'- gCGAUcgCCGGGgGCGUC-GUGCCCUGCu -3'
miRNA:   3'- gGCUA--GGCCCaCGCAGcCACGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 46003 0.74 0.280564
Target:  5'- -gGAUCCaGGGgaggGCGUgGGU-CCCCGCg -3'
miRNA:   3'- ggCUAGG-CCCa---CGCAgCCAcGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 123914 0.74 0.299715
Target:  5'- cCCGaAUCCGGG-GCGUgCuGUGCCCUGg -3'
miRNA:   3'- -GGC-UAGGCCCaCGCA-GcCACGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 137416 0.74 0.306319
Target:  5'- uCgGGUCCGGGUcCGggacCGGgacccGCCCCGCg -3'
miRNA:   3'- -GgCUAGGCCCAcGCa---GCCa----CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 49125 0.74 0.306319
Target:  5'- aCGAUCUGGGcuucaGCG-CGG-GUCCCGCg -3'
miRNA:   3'- gGCUAGGCCCa----CGCaGCCaCGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 5166 0.74 0.311009
Target:  5'- gCCGAU-CGGGUagauccuggcggccGCGUCGGUaGCCgCGCu -3'
miRNA:   3'- -GGCUAgGCCCA--------------CGCAGCCA-CGGgGCG- -5'
5517 5' -61.5 NC_001798.1 + 98573 0.73 0.319861
Target:  5'- gCUGGUggCCGcGGUgGCGUCGGcgGCCCCGg -3'
miRNA:   3'- -GGCUA--GGC-CCA-CGCAGCCa-CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 70935 0.73 0.326799
Target:  5'- cCCGAU-CGGG-GCG-CGGUgGUCCCGCc -3'
miRNA:   3'- -GGCUAgGCCCaCGCaGCCA-CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 28187 0.72 0.370741
Target:  5'- cCCGAgcgagggCgGGGggaagGCGcCGGagGCCCCGCa -3'
miRNA:   3'- -GGCUa------GgCCCa----CGCaGCCa-CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 134631 0.72 0.410323
Target:  5'- cCUGGUCgaGGuGUGCGaggUCGGccugcgGCCCCGCg -3'
miRNA:   3'- -GGCUAGg-CC-CACGC---AGCCa-----CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 72142 0.71 0.418549
Target:  5'- aCCGGccacCCGGGccgGCGUCGG-GCCCaCGa -3'
miRNA:   3'- -GGCUa---GGCCCa--CGCAGCCaCGGG-GCg -5'
5517 5' -61.5 NC_001798.1 + 149659 0.71 0.426874
Target:  5'- gCCGGgcgCCGGGU-CG-CGG-GCCCCGg -3'
miRNA:   3'- -GGCUa--GGCCCAcGCaGCCaCGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 119436 0.71 0.426874
Target:  5'- gCGGUUCGGGUGUGUacguucgaCGGcGCCgCCGUu -3'
miRNA:   3'- gGCUAGGCCCACGCA--------GCCaCGG-GGCG- -5'
5517 5' -61.5 NC_001798.1 + 102222 0.71 0.452427
Target:  5'- gUCGA-CCGGGcGCGgcUCGGggcggGCCUCGCc -3'
miRNA:   3'- -GGCUaGGCCCaCGC--AGCCa----CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 24709 0.71 0.452427
Target:  5'- cCCGcgcCCGGGgcccGCGggcgCGGccGCCCCGCc -3'
miRNA:   3'- -GGCua-GGCCCa---CGCa---GCCa-CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 82379 0.7 0.469918
Target:  5'- gCGcAUCCGcGcGCGcUCGGUGCCCCaGCc -3'
miRNA:   3'- gGC-UAGGCcCaCGC-AGCCACGGGG-CG- -5'
5517 5' -61.5 NC_001798.1 + 92398 0.7 0.478792
Target:  5'- aCGuggCCGcGGU-CGUCGG-GUCCCGCa -3'
miRNA:   3'- gGCua-GGC-CCAcGCAGCCaCGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 69842 0.7 0.496781
Target:  5'- uUGGUCCGGGccGcCGUCGGccGCCCCc- -3'
miRNA:   3'- gGCUAGGCCCa-C-GCAGCCa-CGGGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.