miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5517 5' -61.5 NC_001798.1 + 69842 0.7 0.496781
Target:  5'- uUGGUCCGGGccGcCGUCGGccGCCCCc- -3'
miRNA:   3'- gGCUAGGCCCa-C-GCAGCCa-CGGGGcg -5'
5517 5' -61.5 NC_001798.1 + 147212 0.7 0.505889
Target:  5'- uCCGGcCCGGGcccccgGCGgagcgCGGggGCCCCGg -3'
miRNA:   3'- -GGCUaGGCCCa-----CGCa----GCCa-CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 146486 0.69 0.524314
Target:  5'- uCCGGggCCGGGccGgGcCGGcaacGCCCCGCg -3'
miRNA:   3'- -GGCUa-GGCCCa-CgCaGCCa---CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 86073 0.69 0.524314
Target:  5'- cCCGccGUCUGGGa--GUCGGgGCCCCGg -3'
miRNA:   3'- -GGC--UAGGCCCacgCAGCCaCGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 27511 0.69 0.524314
Target:  5'- gCCGcgCgGGG-GCGcccgCGGgaaggcaGCCCCGCg -3'
miRNA:   3'- -GGCuaGgCCCaCGCa---GCCa------CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 68511 0.69 0.542988
Target:  5'- uUCGGUUCGGGggaggggGCGUCauguccucgGCCCCGUg -3'
miRNA:   3'- -GGCUAGGCCCa------CGCAGcca------CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 107456 0.69 0.542988
Target:  5'- cCCGAccCCGaGGacgGCG-CGGggucucUGCCCCGCa -3'
miRNA:   3'- -GGCUa-GGC-CCa--CGCaGCC------ACGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 1590 0.69 0.552408
Target:  5'- gCCGAagCGcGUGCGcacgCGGUaccgcacguugGCCCCGCg -3'
miRNA:   3'- -GGCUagGCcCACGCa---GCCA-----------CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 150265 0.69 0.552408
Target:  5'- cCCGAcCCGcGcGCGUCGGUcGCgCCUGCc -3'
miRNA:   3'- -GGCUaGGCcCaCGCAGCCA-CG-GGGCG- -5'
5517 5' -61.5 NC_001798.1 + 150205 0.69 0.552408
Target:  5'- gCGGcaCCGGGgGUGUUGGUGCCgCGg -3'
miRNA:   3'- gGCUa-GGCCCaCGCAGCCACGGgGCg -5'
5517 5' -61.5 NC_001798.1 + 15251 0.69 0.560928
Target:  5'- -gGGUCCguuggggGGGUaCGggCGGUGCCCCGg -3'
miRNA:   3'- ggCUAGG-------CCCAcGCa-GCCACGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 31144 0.69 0.571389
Target:  5'- cCCGG-CgCGGGgGCGgCGGUGCgggggcgaCCCGCg -3'
miRNA:   3'- -GGCUaG-GCCCaCGCaGCCACG--------GGGCG- -5'
5517 5' -61.5 NC_001798.1 + 75993 0.69 0.571389
Target:  5'- gCCGccCCGGGcgccgGCGgcaGG-GCCCCGUg -3'
miRNA:   3'- -GGCuaGGCCCa----CGCag-CCaCGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 135332 0.68 0.580939
Target:  5'- cCUGGUgCCGGacgcGUGCGaCGccUGCCCCGCg -3'
miRNA:   3'- -GGCUA-GGCC----CACGCaGCc-ACGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 131338 0.68 0.580939
Target:  5'- cCCGcgccCCGGGcGCGacgUCGGcGCCCgGCg -3'
miRNA:   3'- -GGCua--GGCCCaCGC---AGCCaCGGGgCG- -5'
5517 5' -61.5 NC_001798.1 + 2412 0.68 0.590522
Target:  5'- gCCGAgggcgCCGGcGUGUGgcuGG-GCCCCGg -3'
miRNA:   3'- -GGCUa----GGCC-CACGCag-CCaCGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 139283 0.68 0.598208
Target:  5'- gCCGuccUCgGGGgcgcauagcgccGCGUCGccGCCCCGCg -3'
miRNA:   3'- -GGCu--AGgCCCa-----------CGCAGCcaCGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 27929 0.68 0.600132
Target:  5'- cCCGccgCCGGGgucccgGCGcCGGccgcGCCCCGg -3'
miRNA:   3'- -GGCua-GGCCCa-----CGCaGCCa---CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 43638 0.68 0.609763
Target:  5'- cCCGAcCCaGGG-GCGagGGcUGCUCCGUg -3'
miRNA:   3'- -GGCUaGG-CCCaCGCagCC-ACGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 43018 0.68 0.619409
Target:  5'- gCCGc-CCGGGgggaGCG-CGGgGCCCCGg -3'
miRNA:   3'- -GGCuaGGCCCa---CGCaGCCaCGGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.