miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5517 5' -61.5 NC_001798.1 + 25080 0.66 0.696317
Target:  5'- cCCGG-CCaGG-GCGccgccgggCGGcGCCCCGCg -3'
miRNA:   3'- -GGCUaGGcCCaCGCa-------GCCaCGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 34999 0.66 0.696317
Target:  5'- uCCGG-CCGGG-GCGcaccUCGGcggccaaGCCCCGg -3'
miRNA:   3'- -GGCUaGGCCCaCGC----AGCCa------CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 75120 0.66 0.696317
Target:  5'- cCCGcaGUCCGGGcaggGCGgCGGcgacgacgGgCCCGCg -3'
miRNA:   3'- -GGC--UAGGCCCa---CGCaGCCa-------CgGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 89128 0.66 0.696317
Target:  5'- cCCGGUCCGccuccaGGUGCG-CGacgGCCUCGg -3'
miRNA:   3'- -GGCUAGGC------CCACGCaGCca-CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 130767 0.66 0.696317
Target:  5'- aCCGGaCCGacgauacgauGGUGCGUCGGcGCCgggucaaucaggCCGUg -3'
miRNA:   3'- -GGCUaGGC----------CCACGCAGCCaCGG------------GGCG- -5'
5517 5' -61.5 NC_001798.1 + 133314 0.66 0.694416
Target:  5'- cUCGAUggCCGGG-GgGUCGGggcgaaccuuuaGCCCCGa -3'
miRNA:   3'- -GGCUA--GGCCCaCgCAGCCa-----------CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 48121 0.67 0.686794
Target:  5'- cCCGGguggCCGGGUucaacaagcGCGUCuucUGCgCCGCg -3'
miRNA:   3'- -GGCUa---GGCCCA---------CGCAGcc-ACGgGGCG- -5'
5517 5' -61.5 NC_001798.1 + 65761 0.67 0.686794
Target:  5'- gCGGUgCCGGGgcugGCGUCGuUGaacgCCUGCa -3'
miRNA:   3'- gGCUA-GGCCCa---CGCAGCcACg---GGGCG- -5'
5517 5' -61.5 NC_001798.1 + 11697 0.67 0.677231
Target:  5'- gUCGuuGUCCguggagGGGUGgGUCGGgagGCUCCGg -3'
miRNA:   3'- -GGC--UAGG------CCCACgCAGCCa--CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 32372 0.67 0.677231
Target:  5'- cCCGAgcCCGGGgcccGCGaccCGGcGCCCgGCc -3'
miRNA:   3'- -GGCUa-GGCCCa---CGCa--GCCaCGGGgCG- -5'
5517 5' -61.5 NC_001798.1 + 9165 0.67 0.676272
Target:  5'- cCCGcgCCGGGgggcaGgGUCucuggcgGGU-CCCCGCg -3'
miRNA:   3'- -GGCuaGGCCCa----CgCAG-------CCAcGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 44884 0.67 0.667634
Target:  5'- gCGuguUCCGGGaugGCGUCccugcucgGGUGCUgUGCg -3'
miRNA:   3'- gGCu--AGGCCCa--CGCAG--------CCACGGgGCG- -5'
5517 5' -61.5 NC_001798.1 + 5522 0.67 0.658012
Target:  5'- gCCcuUCCGGGUuCGU-GGUaaugagaugccgGCCCCGCg -3'
miRNA:   3'- -GGcuAGGCCCAcGCAgCCA------------CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 6626 0.67 0.658012
Target:  5'- aCGggCCGGG-GgGaCGGgGCCCCGa -3'
miRNA:   3'- gGCuaGGCCCaCgCaGCCaCGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 4902 0.67 0.658012
Target:  5'- -aGAUCCGGG-GcCGcCGGUcGUCuCCGCc -3'
miRNA:   3'- ggCUAGGCCCaC-GCaGCCA-CGG-GGCG- -5'
5517 5' -61.5 NC_001798.1 + 153011 0.67 0.648372
Target:  5'- gCGGUcgCCGGG-GCGgagucCGG-GCCCgCGCg -3'
miRNA:   3'- gGCUA--GGCCCaCGCa----GCCaCGGG-GCG- -5'
5517 5' -61.5 NC_001798.1 + 132546 0.67 0.647407
Target:  5'- aCgGGUCCGGGgcGCGcUCGGaGCCCgucuuuaCGCc -3'
miRNA:   3'- -GgCUAGGCCCa-CGC-AGCCaCGGG-------GCG- -5'
5517 5' -61.5 NC_001798.1 + 51258 0.68 0.629063
Target:  5'- gCGGacgCCGGGacaGCGccaucacgCGG-GCCCCGCg -3'
miRNA:   3'- gGCUa--GGCCCa--CGCa-------GCCaCGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 43018 0.68 0.619409
Target:  5'- gCCGc-CCGGGgggaGCG-CGGgGCCCCGg -3'
miRNA:   3'- -GGCuaGGCCCa---CGCaGCCaCGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 41801 0.68 0.619409
Target:  5'- -aGGUCCGGGc-CGUCGcGcgacuUGCCCUGCc -3'
miRNA:   3'- ggCUAGGCCCacGCAGC-C-----ACGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.