miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5517 5' -61.5 NC_001798.1 + 31891 0.66 0.705793
Target:  5'- cCCGGaagaggCgCGGGU-CGgacUCGG-GCCCCGCg -3'
miRNA:   3'- -GGCUa-----G-GCCCAcGC---AGCCaCGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 32372 0.67 0.677231
Target:  5'- cCCGAgcCCGGGgcccGCGaccCGGcGCCCgGCc -3'
miRNA:   3'- -GGCUa-GGCCCa---CGCa--GCCaCGGGgCG- -5'
5517 5' -61.5 NC_001798.1 + 34999 0.66 0.696317
Target:  5'- uCCGG-CCGGG-GCGcaccUCGGcggccaaGCCCCGg -3'
miRNA:   3'- -GGCUaGGCCCaCGC----AGCCa------CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 37396 0.66 0.737548
Target:  5'- aCCGAgccaCCGGGcGgGUCcGUGgggccggccgaccaaCCCCGCg -3'
miRNA:   3'- -GGCUa---GGCCCaCgCAGcCAC---------------GGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 39815 0.7 0.496781
Target:  5'- gUGGUCgCGGGUGgcggauCGUCGGcuCCCCGCc -3'
miRNA:   3'- gGCUAG-GCCCAC------GCAGCCacGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 41801 0.68 0.619409
Target:  5'- -aGGUCCGGGc-CGUCGcGcgacuUGCCCUGCc -3'
miRNA:   3'- ggCUAGGCCCacGCAGC-C-----ACGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 42680 0.66 0.752184
Target:  5'- cUCGucgCCGGGaccaccgGCGUCGGggaaccaGuCCCCGUc -3'
miRNA:   3'- -GGCua-GGCCCa------CGCAGCCa------C-GGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 43018 0.68 0.619409
Target:  5'- gCCGc-CCGGGgggaGCG-CGGgGCCCCGg -3'
miRNA:   3'- -GGCuaGGCCCa---CGCaGCCaCGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 43259 0.77 0.185589
Target:  5'- gCGAUcgCCGGGgGCGUC-GUGCCCUGCu -3'
miRNA:   3'- gGCUA--GGCCCaCGCAGcCACGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 43638 0.68 0.609763
Target:  5'- cCCGAcCCaGGG-GCGagGGcUGCUCCGUg -3'
miRNA:   3'- -GGCUaGG-CCCaCGCagCC-ACGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 44884 0.67 0.667634
Target:  5'- gCGuguUCCGGGaugGCGUCccugcucgGGUGCUgUGCg -3'
miRNA:   3'- gGCu--AGGCCCa--CGCAG--------CCACGGgGCG- -5'
5517 5' -61.5 NC_001798.1 + 46003 0.74 0.280564
Target:  5'- -gGAUCCaGGGgaggGCGUgGGU-CCCCGCg -3'
miRNA:   3'- ggCUAGG-CCCa---CGCAgCCAcGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 48121 0.67 0.686794
Target:  5'- cCCGGguggCCGGGUucaacaagcGCGUCuucUGCgCCGCg -3'
miRNA:   3'- -GGCUa---GGCCCA---------CGCAGcc-ACGgGGCG- -5'
5517 5' -61.5 NC_001798.1 + 49125 0.74 0.306319
Target:  5'- aCGAUCUGGGcuucaGCG-CGG-GUCCCGCg -3'
miRNA:   3'- gGCUAGGCCCa----CGCaGCCaCGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 51258 0.68 0.629063
Target:  5'- gCGGacgCCGGGacaGCGccaucacgCGG-GCCCCGCg -3'
miRNA:   3'- gGCUa--GGCCCa--CGCa-------GCCaCGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 51815 0.66 0.743063
Target:  5'- gCGAUCaaCGGGUGgGUcugCGGgacGCgCCUGCa -3'
miRNA:   3'- gGCUAG--GCCCACgCA---GCCa--CG-GGGCG- -5'
5517 5' -61.5 NC_001798.1 + 65761 0.67 0.686794
Target:  5'- gCGGUgCCGGGgcugGCGUCGuUGaacgCCUGCa -3'
miRNA:   3'- gGCUA-GGCCCa---CGCAGCcACg---GGGCG- -5'
5517 5' -61.5 NC_001798.1 + 68511 0.69 0.542988
Target:  5'- uUCGGUUCGGGggaggggGCGUCauguccucgGCCCCGUg -3'
miRNA:   3'- -GGCUAGGCCCa------CGCAGcca------CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 69842 0.7 0.496781
Target:  5'- uUGGUCCGGGccGcCGUCGGccGCCCCc- -3'
miRNA:   3'- gGCUAGGCCCa-C-GCAGCCa-CGGGGcg -5'
5517 5' -61.5 NC_001798.1 + 70935 0.73 0.326799
Target:  5'- cCCGAU-CGGG-GCG-CGGUgGUCCCGCc -3'
miRNA:   3'- -GGCUAgGCCCaCGCaGCCA-CGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.