Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5517 | 5' | -61.5 | NC_001798.1 | + | 1590 | 0.69 | 0.552408 |
Target: 5'- gCCGAagCGcGUGCGcacgCGGUaccgcacguugGCCCCGCg -3' miRNA: 3'- -GGCUagGCcCACGCa---GCCA-----------CGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 2412 | 0.68 | 0.590522 |
Target: 5'- gCCGAgggcgCCGGcGUGUGgcuGG-GCCCCGg -3' miRNA: 3'- -GGCUa----GGCC-CACGCag-CCaCGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 2968 | 0.66 | 0.743063 |
Target: 5'- gCGcgUCGGcGUGCGgCGGggcgGCcggCCCGCg -3' miRNA: 3'- gGCuaGGCC-CACGCaGCCa---CG---GGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 3886 | 0.66 | 0.752184 |
Target: 5'- gCGccCCGGGgGCGggGGgccgGCCCCGg -3' miRNA: 3'- gGCuaGGCCCaCGCagCCa---CGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 4902 | 0.67 | 0.658012 |
Target: 5'- -aGAUCCGGG-GcCGcCGGUcGUCuCCGCc -3' miRNA: 3'- ggCUAGGCCCaC-GCaGCCA-CGG-GGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 5166 | 0.74 | 0.311009 |
Target: 5'- gCCGAU-CGGGUagauccuggcggccGCGUCGGUaGCCgCGCu -3' miRNA: 3'- -GGCUAgGCCCA--------------CGCAGCCA-CGGgGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 5522 | 0.67 | 0.658012 |
Target: 5'- gCCcuUCCGGGUuCGU-GGUaaugagaugccgGCCCCGCg -3' miRNA: 3'- -GGcuAGGCCCAcGCAgCCA------------CGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 6626 | 0.67 | 0.658012 |
Target: 5'- aCGggCCGGG-GgGaCGGgGCCCCGa -3' miRNA: 3'- gGCuaGGCCCaCgCaGCCaCGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 9165 | 0.67 | 0.676272 |
Target: 5'- cCCGcgCCGGGgggcaGgGUCucuggcgGGU-CCCCGCg -3' miRNA: 3'- -GGCuaGGCCCa----CgCAG-------CCAcGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 11697 | 0.67 | 0.677231 |
Target: 5'- gUCGuuGUCCguggagGGGUGgGUCGGgagGCUCCGg -3' miRNA: 3'- -GGC--UAGG------CCCACgCAGCCa--CGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 15251 | 0.69 | 0.560928 |
Target: 5'- -gGGUCCguuggggGGGUaCGggCGGUGCCCCGg -3' miRNA: 3'- ggCUAGG-------CCCAcGCa-GCCACGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 15416 | 0.66 | 0.743063 |
Target: 5'- gCgGGUCCGGGagGgGUuguuUGGgGCCCCGg -3' miRNA: 3'- -GgCUAGGCCCa-CgCA----GCCaCGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 21628 | 1.12 | 0.000807 |
Target: 5'- uCCGAUCCGGGUGCGUCGGUGCCCCGCu -3' miRNA: 3'- -GGCUAGGCCCACGCAGCCACGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 21798 | 0.66 | 0.743063 |
Target: 5'- cCCG-UCCGGGcccGCcUCGGgGCggagCCCGCg -3' miRNA: 3'- -GGCuAGGCCCa--CGcAGCCaCG----GGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 24709 | 0.71 | 0.452427 |
Target: 5'- cCCGcgcCCGGGgcccGCGggcgCGGccGCCCCGCc -3' miRNA: 3'- -GGCua-GGCCCa---CGCa---GCCa-CGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 25080 | 0.66 | 0.696317 |
Target: 5'- cCCGG-CCaGG-GCGccgccgggCGGcGCCCCGCg -3' miRNA: 3'- -GGCUaGGcCCaCGCa-------GCCaCGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 27511 | 0.69 | 0.524314 |
Target: 5'- gCCGcgCgGGG-GCGcccgCGGgaaggcaGCCCCGCg -3' miRNA: 3'- -GGCuaGgCCCaCGCa---GCCa------CGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 27929 | 0.68 | 0.600132 |
Target: 5'- cCCGccgCCGGGgucccgGCGcCGGccgcGCCCCGg -3' miRNA: 3'- -GGCua-GGCCCa-----CGCaGCCa---CGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 28187 | 0.72 | 0.370741 |
Target: 5'- cCCGAgcgagggCgGGGggaagGCGcCGGagGCCCCGCa -3' miRNA: 3'- -GGCUa------GgCCCa----CGCaGCCa-CGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 31144 | 0.69 | 0.571389 |
Target: 5'- cCCGG-CgCGGGgGCGgCGGUGCgggggcgaCCCGCg -3' miRNA: 3'- -GGCUaG-GCCCaCGCaGCCACG--------GGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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