miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5517 5' -61.5 NC_001798.1 + 1590 0.69 0.552408
Target:  5'- gCCGAagCGcGUGCGcacgCGGUaccgcacguugGCCCCGCg -3'
miRNA:   3'- -GGCUagGCcCACGCa---GCCA-----------CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 2412 0.68 0.590522
Target:  5'- gCCGAgggcgCCGGcGUGUGgcuGG-GCCCCGg -3'
miRNA:   3'- -GGCUa----GGCC-CACGCag-CCaCGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 2968 0.66 0.743063
Target:  5'- gCGcgUCGGcGUGCGgCGGggcgGCcggCCCGCg -3'
miRNA:   3'- gGCuaGGCC-CACGCaGCCa---CG---GGGCG- -5'
5517 5' -61.5 NC_001798.1 + 3886 0.66 0.752184
Target:  5'- gCGccCCGGGgGCGggGGgccgGCCCCGg -3'
miRNA:   3'- gGCuaGGCCCaCGCagCCa---CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 4902 0.67 0.658012
Target:  5'- -aGAUCCGGG-GcCGcCGGUcGUCuCCGCc -3'
miRNA:   3'- ggCUAGGCCCaC-GCaGCCA-CGG-GGCG- -5'
5517 5' -61.5 NC_001798.1 + 5166 0.74 0.311009
Target:  5'- gCCGAU-CGGGUagauccuggcggccGCGUCGGUaGCCgCGCu -3'
miRNA:   3'- -GGCUAgGCCCA--------------CGCAGCCA-CGGgGCG- -5'
5517 5' -61.5 NC_001798.1 + 5522 0.67 0.658012
Target:  5'- gCCcuUCCGGGUuCGU-GGUaaugagaugccgGCCCCGCg -3'
miRNA:   3'- -GGcuAGGCCCAcGCAgCCA------------CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 6626 0.67 0.658012
Target:  5'- aCGggCCGGG-GgGaCGGgGCCCCGa -3'
miRNA:   3'- gGCuaGGCCCaCgCaGCCaCGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 9165 0.67 0.676272
Target:  5'- cCCGcgCCGGGgggcaGgGUCucuggcgGGU-CCCCGCg -3'
miRNA:   3'- -GGCuaGGCCCa----CgCAG-------CCAcGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 11697 0.67 0.677231
Target:  5'- gUCGuuGUCCguggagGGGUGgGUCGGgagGCUCCGg -3'
miRNA:   3'- -GGC--UAGG------CCCACgCAGCCa--CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 15251 0.69 0.560928
Target:  5'- -gGGUCCguuggggGGGUaCGggCGGUGCCCCGg -3'
miRNA:   3'- ggCUAGG-------CCCAcGCa-GCCACGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 15416 0.66 0.743063
Target:  5'- gCgGGUCCGGGagGgGUuguuUGGgGCCCCGg -3'
miRNA:   3'- -GgCUAGGCCCa-CgCA----GCCaCGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 21628 1.12 0.000807
Target:  5'- uCCGAUCCGGGUGCGUCGGUGCCCCGCu -3'
miRNA:   3'- -GGCUAGGCCCACGCAGCCACGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 21798 0.66 0.743063
Target:  5'- cCCG-UCCGGGcccGCcUCGGgGCggagCCCGCg -3'
miRNA:   3'- -GGCuAGGCCCa--CGcAGCCaCG----GGGCG- -5'
5517 5' -61.5 NC_001798.1 + 24709 0.71 0.452427
Target:  5'- cCCGcgcCCGGGgcccGCGggcgCGGccGCCCCGCc -3'
miRNA:   3'- -GGCua-GGCCCa---CGCa---GCCa-CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 25080 0.66 0.696317
Target:  5'- cCCGG-CCaGG-GCGccgccgggCGGcGCCCCGCg -3'
miRNA:   3'- -GGCUaGGcCCaCGCa-------GCCaCGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 27511 0.69 0.524314
Target:  5'- gCCGcgCgGGG-GCGcccgCGGgaaggcaGCCCCGCg -3'
miRNA:   3'- -GGCuaGgCCCaCGCa---GCCa------CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 27929 0.68 0.600132
Target:  5'- cCCGccgCCGGGgucccgGCGcCGGccgcGCCCCGg -3'
miRNA:   3'- -GGCua-GGCCCa-----CGCaGCCa---CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 28187 0.72 0.370741
Target:  5'- cCCGAgcgagggCgGGGggaagGCGcCGGagGCCCCGCa -3'
miRNA:   3'- -GGCUa------GgCCCa----CGCaGCCa-CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 31144 0.69 0.571389
Target:  5'- cCCGG-CgCGGGgGCGgCGGUGCgggggcgaCCCGCg -3'
miRNA:   3'- -GGCUaG-GCCCaCGCaGCCACG--------GGGCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.