miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5517 5' -61.5 NC_001798.1 + 153011 0.67 0.648372
Target:  5'- gCGGUcgCCGGG-GCGgagucCGG-GCCCgCGCg -3'
miRNA:   3'- gGCUA--GGCCCaCGCa----GCCaCGGG-GCG- -5'
5517 5' -61.5 NC_001798.1 + 150852 0.66 0.715213
Target:  5'- gCCGGU-CGGGUcGCGgCGGgcugggagGUUCCGCg -3'
miRNA:   3'- -GGCUAgGCCCA-CGCaGCCa-------CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 150466 0.66 0.724569
Target:  5'- gCCGcgCgGGG-GCGcgCGGcgcGCCCCGa -3'
miRNA:   3'- -GGCuaGgCCCaCGCa-GCCa--CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 150341 0.66 0.751276
Target:  5'- gCGA-CCGGG-GCGcgCGGUGCgcguccaCCgGCa -3'
miRNA:   3'- gGCUaGGCCCaCGCa-GCCACG-------GGgCG- -5'
5517 5' -61.5 NC_001798.1 + 150265 0.69 0.552408
Target:  5'- cCCGAcCCGcGcGCGUCGGUcGCgCCUGCc -3'
miRNA:   3'- -GGCUaGGCcCaCGCAGCCA-CG-GGGCG- -5'
5517 5' -61.5 NC_001798.1 + 150205 0.69 0.552408
Target:  5'- gCGGcaCCGGGgGUGUUGGUGCCgCGg -3'
miRNA:   3'- gGCUa-GGCCCaCGCAGCCACGGgGCg -5'
5517 5' -61.5 NC_001798.1 + 149659 0.71 0.426874
Target:  5'- gCCGGgcgCCGGGU-CG-CGG-GCCCCGg -3'
miRNA:   3'- -GGCUa--GGCCCAcGCaGCCaCGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 149393 0.66 0.724569
Target:  5'- uCCGAcgCGGGggGCGUCGGguagucgggggGCCUcaCGCa -3'
miRNA:   3'- -GGCUagGCCCa-CGCAGCCa----------CGGG--GCG- -5'
5517 5' -61.5 NC_001798.1 + 148120 0.66 0.752184
Target:  5'- aCGcg-CGcGGUGUGUCGacuugcaUGCCCCGCa -3'
miRNA:   3'- gGCuagGC-CCACGCAGCc------ACGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 147212 0.7 0.505889
Target:  5'- uCCGGcCCGGGcccccgGCGgagcgCGGggGCCCCGg -3'
miRNA:   3'- -GGCUaGGCCCa-----CGCa----GCCa-CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 146486 0.69 0.524314
Target:  5'- uCCGGggCCGGGccGgGcCGGcaacGCCCCGCg -3'
miRNA:   3'- -GGCUa-GGCCCa-CgCaGCCa---CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 143358 0.66 0.714273
Target:  5'- cCCGGUCCGGcucuccgucgagaGgccccacgugcGCGUcCGGUGCggucCCCGCa -3'
miRNA:   3'- -GGCUAGGCC-------------Ca----------CGCA-GCCACG----GGGCG- -5'
5517 5' -61.5 NC_001798.1 + 140203 0.66 0.740309
Target:  5'- gCCGGUgCUGGuGUGCGUgGgGUcgccgacccagacgGCCUCGCu -3'
miRNA:   3'- -GGCUA-GGCC-CACGCAgC-CA--------------CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 139283 0.68 0.598208
Target:  5'- gCCGuccUCgGGGgcgcauagcgccGCGUCGccGCCCCGCg -3'
miRNA:   3'- -GGCu--AGgCCCa-----------CGCAGCcaCGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 137416 0.74 0.306319
Target:  5'- uCgGGUCCGGGUcCGggacCGGgacccGCCCCGCg -3'
miRNA:   3'- -GgCUAGGCCCAcGCa---GCCa----CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 135332 0.68 0.580939
Target:  5'- cCUGGUgCCGGacgcGUGCGaCGccUGCCCCGCg -3'
miRNA:   3'- -GGCUA-GGCC----CACGCaGCc-ACGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 134631 0.72 0.410323
Target:  5'- cCUGGUCgaGGuGUGCGaggUCGGccugcgGCCCCGCg -3'
miRNA:   3'- -GGCUAGg-CC-CACGC---AGCCa-----CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 133314 0.66 0.694416
Target:  5'- cUCGAUggCCGGG-GgGUCGGggcgaaccuuuaGCCCCGa -3'
miRNA:   3'- -GGCUA--GGCCCaCgCAGCCa-----------CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 132546 0.67 0.647407
Target:  5'- aCgGGUCCGGGgcGCGcUCGGaGCCCgucuuuaCGCc -3'
miRNA:   3'- -GgCUAGGCCCa-CGC-AGCCaCGGG-------GCG- -5'
5517 5' -61.5 NC_001798.1 + 131338 0.68 0.580939
Target:  5'- cCCGcgccCCGGGcGCGacgUCGGcGCCCgGCg -3'
miRNA:   3'- -GGCua--GGCCCaCGC---AGCCaCGGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.