miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5517 5' -61.5 NC_001798.1 + 130767 0.66 0.696317
Target:  5'- aCCGGaCCGacgauacgauGGUGCGUCGGcGCCgggucaaucaggCCGUg -3'
miRNA:   3'- -GGCUaGGC----------CCACGCAGCCaCGG------------GGCG- -5'
5517 5' -61.5 NC_001798.1 + 128085 0.66 0.728293
Target:  5'- cCCGAUgUGGucgGCGUCGGcgauccccaacgcacUGCCCCc- -3'
miRNA:   3'- -GGCUAgGCCca-CGCAGCC---------------ACGGGGcg -5'
5517 5' -61.5 NC_001798.1 + 123914 0.74 0.299715
Target:  5'- cCCGaAUCCGGG-GCGUgCuGUGCCCUGg -3'
miRNA:   3'- -GGC-UAGGCCCaCGCA-GcCACGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 121994 0.66 0.724569
Target:  5'- gCGGccUCCGGcGUcGCcUCGGgGCUCCGCc -3'
miRNA:   3'- gGCU--AGGCC-CA-CGcAGCCaCGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 119436 0.71 0.426874
Target:  5'- gCGGUUCGGGUGUGUacguucgaCGGcGCCgCCGUu -3'
miRNA:   3'- gGCUAGGCCCACGCA--------GCCaCGG-GGCG- -5'
5517 5' -61.5 NC_001798.1 + 107456 0.69 0.542988
Target:  5'- cCCGAccCCGaGGacgGCG-CGGggucucUGCCCCGCa -3'
miRNA:   3'- -GGCUa-GGC-CCa--CGCaGCC------ACGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 106042 0.66 0.715213
Target:  5'- gCCGugccuUCCGGGUcacGUGUCGGggagggggGCCUuUGCg -3'
miRNA:   3'- -GGCu----AGGCCCA---CGCAGCCa-------CGGG-GCG- -5'
5517 5' -61.5 NC_001798.1 + 102222 0.71 0.452427
Target:  5'- gUCGA-CCGGGcGCGgcUCGGggcggGCCUCGCc -3'
miRNA:   3'- -GGCUaGGCCCaCGC--AGCCa----CGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 98573 0.73 0.319861
Target:  5'- gCUGGUggCCGcGGUgGCGUCGGcgGCCCCGg -3'
miRNA:   3'- -GGCUA--GGC-CCA-CGCAGCCa-CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 92398 0.7 0.478792
Target:  5'- aCGuggCCGcGGU-CGUCGG-GUCCCGCa -3'
miRNA:   3'- gGCua-GGC-CCAcGCAGCCaCGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 89128 0.66 0.696317
Target:  5'- cCCGGUCCGccuccaGGUGCG-CGacgGCCUCGg -3'
miRNA:   3'- -GGCUAGGC------CCACGCaGCca-CGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 86073 0.69 0.524314
Target:  5'- cCCGccGUCUGGGa--GUCGGgGCCCCGg -3'
miRNA:   3'- -GGC--UAGGCCCacgCAGCCaCGGGGCg -5'
5517 5' -61.5 NC_001798.1 + 84598 0.81 0.10357
Target:  5'- gUCGGUCCcGGUGC--CGGUGCCCCGCc -3'
miRNA:   3'- -GGCUAGGcCCACGcaGCCACGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 83886 0.66 0.743063
Target:  5'- cCCGGcCCGGGcGCuccggaagagUGGUGCgCCGCc -3'
miRNA:   3'- -GGCUaGGCCCaCGca--------GCCACGgGGCG- -5'
5517 5' -61.5 NC_001798.1 + 83848 0.66 0.743063
Target:  5'- cCCG-UCCGGGcgGCGcuggCGG-GCCCgagGCg -3'
miRNA:   3'- -GGCuAGGCCCa-CGCa---GCCaCGGGg--CG- -5'
5517 5' -61.5 NC_001798.1 + 82379 0.7 0.469918
Target:  5'- gCGcAUCCGcGcGCGcUCGGUGCCCCaGCc -3'
miRNA:   3'- gGC-UAGGCcCaCGC-AGCCACGGGG-CG- -5'
5517 5' -61.5 NC_001798.1 + 75993 0.69 0.571389
Target:  5'- gCCGccCCGGGcgccgGCGgcaGG-GCCCCGUg -3'
miRNA:   3'- -GGCuaGGCCCa----CGCag-CCaCGGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 75120 0.66 0.696317
Target:  5'- cCCGcaGUCCGGGcaggGCGgCGGcgacgacgGgCCCGCg -3'
miRNA:   3'- -GGC--UAGGCCCa---CGCaGCCa-------CgGGGCG- -5'
5517 5' -61.5 NC_001798.1 + 72142 0.71 0.418549
Target:  5'- aCCGGccacCCGGGccgGCGUCGG-GCCCaCGa -3'
miRNA:   3'- -GGCUa---GGCCCa--CGCAGCCaCGGG-GCg -5'
5517 5' -61.5 NC_001798.1 + 70935 0.73 0.326799
Target:  5'- cCCGAU-CGGG-GCG-CGGUgGUCCCGCc -3'
miRNA:   3'- -GGCUAgGCCCaCGCaGCCA-CGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.