Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5519 | 5' | -59.2 | NC_001798.1 | + | 141484 | 0.69 | 0.607348 |
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Target: 5'- uCG-CCGCGCgGGGgGCUGAUGuccGUGg -3' miRNA: 3'- -GCgGGCGCGgCCCgCGAUUACuc-UAC- -5' |
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| 5519 | 5' | -59.2 | NC_001798.1 | + | 146509 | 0.72 | 0.410007 |
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Target: 5'- aCGcCCCGCGCCGGcCGCgGcgGAGAg- -3' miRNA: 3'- -GC-GGGCGCGGCCcGCGaUuaCUCUac -5' |
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| 5519 | 5' | -59.2 | NC_001798.1 | + | 147173 | 0.69 | 0.577467 |
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Target: 5'- cCGCCCgGCGCCGGGCGgaAGg------ -3' miRNA: 3'- -GCGGG-CGCGGCCCGCgaUUacucuac -5' |
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| 5519 | 5' | -59.2 | NC_001798.1 | + | 148016 | 0.67 | 0.742729 |
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Target: 5'- gCGCCCGUccccuuccucuaccGCgUGGGCGCgggcgggGGGGUGg -3' miRNA: 3'- -GCGGGCG--------------CG-GCCCGCGauua---CUCUAC- -5' |
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| 5519 | 5' | -59.2 | NC_001798.1 | + | 150903 | 0.71 | 0.462761 |
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Target: 5'- cCGCCCccGCGCCGGGgCGCUcuucGggGGGcgGg -3' miRNA: 3'- -GCGGG--CGCGGCCC-GCGA----UuaCUCuaC- -5' |
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| 5519 | 5' | -59.2 | NC_001798.1 | + | 151156 | 0.73 | 0.38507 |
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Target: 5'- uCGUCCGUGCCGGGCcacgggGGGGUGg -3' miRNA: 3'- -GCGGGCGCGGCCCGcgauuaCUCUAC- -5' |
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| 5519 | 5' | -59.2 | NC_001798.1 | + | 152268 | 0.66 | 0.800461 |
|
Target: 5'- aGCUCGUGCCGGGCcgggGUUccAUGAGccGg -3' miRNA: 3'- gCGGGCGCGGCCCG----CGAu-UACUCuaC- -5' |
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| 5519 | 5' | -59.2 | NC_001798.1 | + | 153033 | 0.66 | 0.773564 |
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Target: 5'- gGCCCGCGCgGcGGCGCgcgguUGGc--- -3' miRNA: 3'- gCGGGCGCGgC-CCGCGauu--ACUcuac -5' |
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| 5519 | 5' | -59.2 | NC_001798.1 | + | 154177 | 0.69 | 0.607348 |
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Target: 5'- gGCCCGgaGCCGGaGCGCgucgGGGcgGg -3' miRNA: 3'- gCGGGCg-CGGCC-CGCGauuaCUCuaC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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