miRNA display CGI


Results 1 - 20 of 477 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 3' -64.1 NC_001798.1 + 154510 0.77 0.143402
Target:  5'- cGCgCGCCGCGGGgcugccuuccCGCGGGCGCccccGCGcGGCu -3'
miRNA:   3'- -CG-GCGGUGCCU----------GCGCCUGCG----CGC-CCG- -5'
5520 3' -64.1 NC_001798.1 + 154398 0.71 0.332443
Target:  5'- gGgCGCgaagGCGGGCgGCGGcgGCGgGCGGGCg -3'
miRNA:   3'- -CgGCGg---UGCCUG-CGCC--UGCgCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 154095 0.68 0.449173
Target:  5'- -gCGCCG-GGGCGCGGccgGCGC-CGGGg -3'
miRNA:   3'- cgGCGGUgCCUGCGCC---UGCGcGCCCg -5'
5520 3' -64.1 NC_001798.1 + 154044 0.7 0.383276
Target:  5'- aGCgCGCCG-GGGCGCGGcACggcuggaGCGCcgGGGCg -3'
miRNA:   3'- -CG-GCGGUgCCUGCGCC-UG-------CGCG--CCCG- -5'
5520 3' -64.1 NC_001798.1 + 153957 0.67 0.547619
Target:  5'- cGCCGCaggaGCgaGGACGCGGccgGCGCGCu--- -3'
miRNA:   3'- -CGGCGg---UG--CCUGCGCC---UGCGCGcccg -5'
5520 3' -64.1 NC_001798.1 + 153818 0.74 0.213816
Target:  5'- gGCgGCgGCaGGCGCGG-CGUGCGGGg -3'
miRNA:   3'- -CGgCGgUGcCUGCGCCuGCGCGCCCg -5'
5520 3' -64.1 NC_001798.1 + 153670 0.86 0.032951
Target:  5'- gGCgCGuCCGCGGGCGgGGACGCGgGGGCc -3'
miRNA:   3'- -CG-GC-GGUGCCUGCgCCUGCGCgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 153377 0.72 0.286113
Target:  5'- cGCCGCCACGcGGCGcCGGAaccgGuCGCGGuCg -3'
miRNA:   3'- -CGGCGGUGC-CUGC-GCCUg---C-GCGCCcG- -5'
5520 3' -64.1 NC_001798.1 + 153062 0.71 0.304664
Target:  5'- cGCCGCCcccugggGCGGGCGgagcggcgGGGCgGCGCcGGGCc -3'
miRNA:   3'- -CGGCGG-------UGCCUGCg-------CCUG-CGCG-CCCG- -5'
5520 3' -64.1 NC_001798.1 + 152999 0.71 0.339494
Target:  5'- aGCCGgCGCGGG-GCGGuCGC-CGGGg -3'
miRNA:   3'- -CGGCgGUGCCUgCGCCuGCGcGCCCg -5'
5520 3' -64.1 NC_001798.1 + 151606 0.69 0.440698
Target:  5'- cGCUcgGCCGgGGGC-CGGGC-CGgGGGCg -3'
miRNA:   3'- -CGG--CGGUgCCUGcGCCUGcGCgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 151284 0.68 0.449173
Target:  5'- gGCCGCCuCGGccuccACGCGGGuC-CGgGGGUc -3'
miRNA:   3'- -CGGCGGuGCC-----UGCGCCU-GcGCgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 151163 0.69 0.415831
Target:  5'- uGCCggGCCACGGGgggGUGGGCGacaGGGCg -3'
miRNA:   3'- -CGG--CGGUGCCUg--CGCCUGCgcgCCCG- -5'
5520 3' -64.1 NC_001798.1 + 150899 0.72 0.29881
Target:  5'- aCCGCCGCccccgcgccgGGGCGCucuucgggGGGCGgGCGGGa -3'
miRNA:   3'- cGGCGGUG----------CCUGCG--------CCUGCgCGCCCg -5'
5520 3' -64.1 NC_001798.1 + 150814 0.76 0.155169
Target:  5'- cGCCGCCGCugcugcugcuccgcgGGGCGCcaggGGGCGCcggucgggucgcgGCGGGCu -3'
miRNA:   3'- -CGGCGGUG---------------CCUGCG----CCUGCG-------------CGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 150672 0.73 0.23635
Target:  5'- cGCCGCCGCGGcgucuucgcccacccGCGCGccuGCGCGCGccccccgccGGCc -3'
miRNA:   3'- -CGGCGGUGCC---------------UGCGCc--UGCGCGC---------CCG- -5'
5520 3' -64.1 NC_001798.1 + 150465 0.74 0.199529
Target:  5'- gGCCGCgCGgGGGCGCGcGGCGCGCcccgacgacuGuGGCa -3'
miRNA:   3'- -CGGCG-GUgCCUGCGC-CUGCGCG----------C-CCG- -5'
5520 3' -64.1 NC_001798.1 + 150423 0.74 0.199529
Target:  5'- gGCgGCgGCGG-CGCggggcggacuccGGACGCGCGGGg -3'
miRNA:   3'- -CGgCGgUGCCuGCG------------CCUGCGCGCCCg -5'
5520 3' -64.1 NC_001798.1 + 150358 0.74 0.204196
Target:  5'- uGCgCGuCCAcCGGcACgGCGGGCgGCGCGGGCc -3'
miRNA:   3'- -CG-GC-GGU-GCC-UG-CGCCUG-CGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 150177 0.68 0.466387
Target:  5'- gGCCGCCGCccccucCGCGG-CGUGgGGGg -3'
miRNA:   3'- -CGGCGGUGccu---GCGCCuGCGCgCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.