miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 5' -59.8 NC_001798.1 + 23040 1.04 0.002507
Target:  5'- cUGGCCUCGAUGGUGGACGAGGCCGUUc -3'
miRNA:   3'- -ACCGGAGCUACCACCUGCUCCGGCAA- -5'
5521 5' -59.8 NC_001798.1 + 57454 0.74 0.310507
Target:  5'- gGGCC-CGGucuUGGgGGGCGGGGCCGg- -3'
miRNA:   3'- aCCGGaGCU---ACCaCCUGCUCCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 93146 0.72 0.386492
Target:  5'- cUGGCCUCGGugaUGGcGGGCGAcGCCGc- -3'
miRNA:   3'- -ACCGGAGCU---ACCaCCUGCUcCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 42616 0.72 0.394735
Target:  5'- cGGCCUCGucguccgGGAgGGGGCCGUg -3'
miRNA:   3'- aCCGGAGCuacca--CCUgCUCCGGCAa -5'
5521 5' -59.8 NC_001798.1 + 22748 0.72 0.411559
Target:  5'- gGGCCgaggucgCGAUGGcGGACGAGGaCGg- -3'
miRNA:   3'- aCCGGa------GCUACCaCCUGCUCCgGCaa -5'
5521 5' -59.8 NC_001798.1 + 120564 0.71 0.420135
Target:  5'- aGGCCgcugUUGGUGGUGGugGAggGGCgGUa -3'
miRNA:   3'- aCCGG----AGCUACCACCugCU--CCGgCAa -5'
5521 5' -59.8 NC_001798.1 + 148840 0.71 0.428819
Target:  5'- aGGCCUCGggGGUGGGgGcGGCUu-- -3'
miRNA:   3'- aCCGGAGCuaCCACCUgCuCCGGcaa -5'
5521 5' -59.8 NC_001798.1 + 52233 0.71 0.437607
Target:  5'- gUGGCuCUCGGUGGUcGugGGGGCgCGc- -3'
miRNA:   3'- -ACCG-GAGCUACCAcCugCUCCG-GCaa -5'
5521 5' -59.8 NC_001798.1 + 39539 0.71 0.446499
Target:  5'- cGcGCCUCGccgugGGUGGcgcCGGGGCCGUc -3'
miRNA:   3'- aC-CGGAGCua---CCACCu--GCUCCGGCAa -5'
5521 5' -59.8 NC_001798.1 + 4378 0.71 0.455489
Target:  5'- cGGCggCGGUGGUGGugGuGGUgGUg -3'
miRNA:   3'- aCCGgaGCUACCACCugCuCCGgCAa -5'
5521 5' -59.8 NC_001798.1 + 85280 0.7 0.473758
Target:  5'- aGGCUUCGG-GG-GGGCgGGGGCCGg- -3'
miRNA:   3'- aCCGGAGCUaCCaCCUG-CUCCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 77196 0.7 0.49051
Target:  5'- cGGCaagucccgcggCGAcGGUGGACGcGGCCGUg -3'
miRNA:   3'- aCCGga---------GCUaCCACCUGCuCCGGCAa -5'
5521 5' -59.8 NC_001798.1 + 36847 0.7 0.492388
Target:  5'- cGGCUgugUGGUGgGUGGGgGAGGCaCGUUg -3'
miRNA:   3'- aCCGGa--GCUAC-CACCUgCUCCG-GCAA- -5'
5521 5' -59.8 NC_001798.1 + 8782 0.7 0.520941
Target:  5'- aGGCUUCuGccGGgacGGGCGAGGCCGc- -3'
miRNA:   3'- aCCGGAG-CuaCCa--CCUGCUCCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 24551 0.69 0.530603
Target:  5'- gGcGCCggCGGUGGUGG-CGGcGGCCGg- -3'
miRNA:   3'- aC-CGGa-GCUACCACCuGCU-CCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 39870 0.69 0.539355
Target:  5'- aGGCUUCGggGGUgccggcguccucgGGGCG-GGCCGg- -3'
miRNA:   3'- aCCGGAGCuaCCA-------------CCUGCuCCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 73926 0.69 0.540331
Target:  5'- aGGCCaUCGAgggaugucUGGUGGAgGGGGgCGa- -3'
miRNA:   3'- aCCGG-AGCU--------ACCACCUgCUCCgGCaa -5'
5521 5' -59.8 NC_001798.1 + 11673 0.69 0.540331
Target:  5'- gGGUCUCGggGGgaGGACGGGGgUGUc -3'
miRNA:   3'- aCCGGAGCuaCCa-CCUGCUCCgGCAa -5'
5521 5' -59.8 NC_001798.1 + 95311 0.69 0.579777
Target:  5'- cGGCgUCGAgucucGG-GGGCGGGGCCc-- -3'
miRNA:   3'- aCCGgAGCUa----CCaCCUGCUCCGGcaa -5'
5521 5' -59.8 NC_001798.1 + 50719 0.69 0.579777
Target:  5'- gGGUCUgcGUGG-GGACGAGGCCc-- -3'
miRNA:   3'- aCCGGAgcUACCaCCUGCUCCGGcaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.