Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5521 | 5' | -59.8 | NC_001798.1 | + | 95311 | 0.69 | 0.579777 |
Target: 5'- cGGCgUCGAgucucGG-GGGCGGGGCCc-- -3' miRNA: 3'- aCCGgAGCUa----CCaCCUGCUCCGGcaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 108824 | 0.68 | 0.589745 |
Target: 5'- cGGCCUCGAcgUGGcccgugggcgucUGGACGAcgggcgGGCUGg- -3' miRNA: 3'- aCCGGAGCU--ACC------------ACCUGCU------CCGGCaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 140508 | 0.68 | 0.609761 |
Target: 5'- cGGCCaaccuucCGG-GGUGGACGcGGCUGUUc -3' miRNA: 3'- aCCGGa------GCUaCCACCUGCuCCGGCAA- -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 102014 | 0.68 | 0.618793 |
Target: 5'- cGGCCUUggcgggguagcggGGUGGuUGGGCGGGGgucuCCGUg -3' miRNA: 3'- aCCGGAG-------------CUACC-ACCUGCUCC----GGCAa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 63522 | 0.68 | 0.619797 |
Target: 5'- cGGCCUCGucgcGGcuGAUGAGGUCGUUc -3' miRNA: 3'- aCCGGAGCua--CCacCUGCUCCGGCAA- -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 5916 | 0.68 | 0.629842 |
Target: 5'- gGGCC-CGGacgGG-GGGCG-GGCCGUUc -3' miRNA: 3'- aCCGGaGCUa--CCaCCUGCuCCGGCAA- -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 11592 | 0.68 | 0.639889 |
Target: 5'- cUGGCCgaUCGcGUGGaauUGGGCGGGGCUa-- -3' miRNA: 3'- -ACCGG--AGC-UACC---ACCUGCUCCGGcaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 29925 | 0.67 | 0.648926 |
Target: 5'- gUGGgCUCGggGGcgGGACGcuugacgGGGCCGa- -3' miRNA: 3'- -ACCgGAGCuaCCa-CCUGC-------UCCGGCaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 151167 | 0.67 | 0.64993 |
Target: 5'- gGGCCaCGGgggGGUGGGCGAcagGGCgCGg- -3' miRNA: 3'- aCCGGaGCUa--CCACCUGCU---CCG-GCaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 121788 | 0.67 | 0.679938 |
Target: 5'- cGGUCUCGGgcgGGgccGGGCc-GGCCGUUg -3' miRNA: 3'- aCCGGAGCUa--CCa--CCUGcuCCGGCAA- -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 90164 | 0.67 | 0.679938 |
Target: 5'- aUGuGCUcgagggCGGUGGUGGAC-AGGUCGUa -3' miRNA: 3'- -AC-CGGa-----GCUACCACCUGcUCCGGCAa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 134989 | 0.67 | 0.689876 |
Target: 5'- gGGCCUgGcccgcGGUGGGCGccaGGGUCGUc -3' miRNA: 3'- aCCGGAgCua---CCACCUGC---UCCGGCAa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 139168 | 0.67 | 0.689876 |
Target: 5'- cGGCCUCGcUGGaccGGACGAcGuuGUa -3' miRNA: 3'- aCCGGAGCuACCa--CCUGCUcCggCAa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 144075 | 0.66 | 0.709605 |
Target: 5'- cUGGCCggGAUGGUGGuACGGGuCCu-- -3' miRNA: 3'- -ACCGGagCUACCACC-UGCUCcGGcaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 93348 | 0.66 | 0.719379 |
Target: 5'- cGGCCcuccaccugacCGA-GGUGGACGAcgccgGGCCGg- -3' miRNA: 3'- aCCGGa----------GCUaCCACCUGCU-----CCGGCaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 83822 | 0.66 | 0.719379 |
Target: 5'- cGGCCU-GAUGcacGGACG-GGCCGg- -3' miRNA: 3'- aCCGGAgCUACca-CCUGCuCCGGCaa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 15331 | 0.66 | 0.719379 |
Target: 5'- gGGCCccggcgCGGUagcGGgGGGCGAGGCgGUg -3' miRNA: 3'- aCCGGa-----GCUA---CCaCCUGCUCCGgCAa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 66894 | 0.66 | 0.719379 |
Target: 5'- aGGCCac---GG-GGGCGGGGCCGUc -3' miRNA: 3'- aCCGGagcuaCCaCCUGCUCCGGCAa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 4863 | 0.66 | 0.729081 |
Target: 5'- cGGgUUCGG-GGUGGGCGGcGGuCCGUc -3' miRNA: 3'- aCCgGAGCUaCCACCUGCU-CC-GGCAa -5' |
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5521 | 5' | -59.8 | NC_001798.1 | + | 71969 | 0.66 | 0.729081 |
Target: 5'- cUGGCCcUGGUGGUcggGGACGcgcugaGGGCCa-- -3' miRNA: 3'- -ACCGGaGCUACCA---CCUGC------UCCGGcaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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