miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 5' -59.8 NC_001798.1 + 151602 0.66 0.748234
Target:  5'- cUGGCgCUCGGccGG-GGGCcGGGCCGg- -3'
miRNA:   3'- -ACCG-GAGCUa-CCaCCUGcUCCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 151167 0.67 0.64993
Target:  5'- gGGCCaCGGgggGGUGGGCGAcagGGCgCGg- -3'
miRNA:   3'- aCCGGaGCUa--CCACCUGCU---CCG-GCaa -5'
5521 5' -59.8 NC_001798.1 + 148840 0.71 0.428819
Target:  5'- aGGCCUCGggGGUGGGgGcGGCUu-- -3'
miRNA:   3'- aCCGGAGCuaCCACCUgCuCCGGcaa -5'
5521 5' -59.8 NC_001798.1 + 144075 0.66 0.709605
Target:  5'- cUGGCCggGAUGGUGGuACGGGuCCu-- -3'
miRNA:   3'- -ACCGGagCUACCACC-UGCUCcGGcaa -5'
5521 5' -59.8 NC_001798.1 + 140508 0.68 0.609761
Target:  5'- cGGCCaaccuucCGG-GGUGGACGcGGCUGUUc -3'
miRNA:   3'- aCCGGa------GCUaCCACCUGCuCCGGCAA- -5'
5521 5' -59.8 NC_001798.1 + 139168 0.67 0.689876
Target:  5'- cGGCCUCGcUGGaccGGACGAcGuuGUa -3'
miRNA:   3'- aCCGGAGCuACCa--CCUGCUcCggCAa -5'
5521 5' -59.8 NC_001798.1 + 135773 0.66 0.748234
Target:  5'- cGGCCggcCGccGGcccgccGGAgGAGGCCGUg -3'
miRNA:   3'- aCCGGa--GCuaCCa-----CCUgCUCCGGCAa -5'
5521 5' -59.8 NC_001798.1 + 134989 0.67 0.689876
Target:  5'- gGGCCUgGcccgcGGUGGGCGccaGGGUCGUc -3'
miRNA:   3'- aCCGGAgCua---CCACCUGC---UCCGGCAa -5'
5521 5' -59.8 NC_001798.1 + 130531 0.66 0.757667
Target:  5'- gUGGCggCGAUGGccccgaGGugGGGGCCc-- -3'
miRNA:   3'- -ACCGgaGCUACCa-----CCugCUCCGGcaa -5'
5521 5' -59.8 NC_001798.1 + 121788 0.67 0.679938
Target:  5'- cGGUCUCGGgcgGGgccGGGCc-GGCCGUUg -3'
miRNA:   3'- aCCGGAGCUa--CCa--CCUGcuCCGGCAA- -5'
5521 5' -59.8 NC_001798.1 + 120564 0.71 0.420135
Target:  5'- aGGCCgcugUUGGUGGUGGugGAggGGCgGUa -3'
miRNA:   3'- aCCGG----AGCUACCACCugCU--CCGgCAa -5'
5521 5' -59.8 NC_001798.1 + 108824 0.68 0.589745
Target:  5'- cGGCCUCGAcgUGGcccgugggcgucUGGACGAcgggcgGGCUGg- -3'
miRNA:   3'- aCCGGAGCU--ACC------------ACCUGCU------CCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 102014 0.68 0.618793
Target:  5'- cGGCCUUggcgggguagcggGGUGGuUGGGCGGGGgucuCCGUg -3'
miRNA:   3'- aCCGGAG-------------CUACC-ACCUGCUCC----GGCAa -5'
5521 5' -59.8 NC_001798.1 + 95563 0.66 0.757667
Target:  5'- cGGCCcUGGaGGUGGcccACGAGGCgGa- -3'
miRNA:   3'- aCCGGaGCUaCCACC---UGCUCCGgCaa -5'
5521 5' -59.8 NC_001798.1 + 95311 0.69 0.579777
Target:  5'- cGGCgUCGAgucucGG-GGGCGGGGCCc-- -3'
miRNA:   3'- aCCGgAGCUa----CCaCCUGCUCCGGcaa -5'
5521 5' -59.8 NC_001798.1 + 93348 0.66 0.719379
Target:  5'- cGGCCcuccaccugacCGA-GGUGGACGAcgccgGGCCGg- -3'
miRNA:   3'- aCCGGa----------GCUaCCACCUGCU-----CCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 93146 0.72 0.386492
Target:  5'- cUGGCCUCGGugaUGGcGGGCGAcGCCGc- -3'
miRNA:   3'- -ACCGGAGCU---ACCaCCUGCUcCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 90164 0.67 0.679938
Target:  5'- aUGuGCUcgagggCGGUGGUGGAC-AGGUCGUa -3'
miRNA:   3'- -AC-CGGa-----GCUACCACCUGcUCCGGCAa -5'
5521 5' -59.8 NC_001798.1 + 85280 0.7 0.473758
Target:  5'- aGGCUUCGG-GG-GGGCgGGGGCCGg- -3'
miRNA:   3'- aCCGGAGCUaCCaCCUG-CUCCGGCaa -5'
5521 5' -59.8 NC_001798.1 + 83822 0.66 0.719379
Target:  5'- cGGCCU-GAUGcacGGACG-GGCCGg- -3'
miRNA:   3'- aCCGGAgCUACca-CCUGCuCCGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.