Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5522 | 5' | -53.5 | NC_001798.1 | + | 23161 | 0.87 | 0.124208 |
Target: 5'- aUUAUGGcG-AGGAGAACGACGACGACGa -3' miRNA: 3'- -AAUACC-CgUCCUCUUGCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 75129 | 0.86 | 0.145424 |
Target: 5'- ---cGGGCAGGGcGGCGGCGACGACGg -3' miRNA: 3'- aauaCCCGUCCUcUUGCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 26605 | 0.85 | 0.161356 |
Target: 5'- ---cGGaGCuGGAGGACGACGACGACGg -3' miRNA: 3'- aauaCC-CGuCCUCUUGCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 122828 | 0.81 | 0.293104 |
Target: 5'- ---aGGGCGGucGGGGGCGGCGGCGGCGg -3' miRNA: 3'- aauaCCCGUC--CUCUUGCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 22903 | 0.81 | 0.293104 |
Target: 5'- -gGUGGGCcggAGGAGAACGAagacgaggcCGACGACGc -3' miRNA: 3'- aaUACCCG---UCCUCUUGCU---------GCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 22199 | 0.79 | 0.36071 |
Target: 5'- ---aGGGCAGGGGAGCGagcccgcccGCGACGAgGg -3' miRNA: 3'- aauaCCCGUCCUCUUGC---------UGCUGCUgC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 105613 | 0.78 | 0.420348 |
Target: 5'- ---gGcGGCGGGcGGGCGACGACGGCGc -3' miRNA: 3'- aauaC-CCGUCCuCUUGCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 153073 | 0.77 | 0.466419 |
Target: 5'- ---gGGGCGGGcGGAGCGGCGggGCGGCGc -3' miRNA: 3'- aauaCCCGUCC-UCUUGCUGC--UGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 34604 | 0.77 | 0.495282 |
Target: 5'- -gGUGGgacGCGGGcaaAGGGCGGCGGCGGCGg -3' miRNA: 3'- aaUACC---CGUCC---UCUUGCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 128535 | 0.77 | 0.466419 |
Target: 5'- ---cGGGCGGGuGAACGAgcCGACGGCc -3' miRNA: 3'- aauaCCCGUCCuCUUGCU--GCUGCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 102473 | 0.76 | 0.534963 |
Target: 5'- -gGUGGGCGGGAGGagGCGgguaguGCGGgGACGg -3' miRNA: 3'- aaUACCCGUCCUCU--UGC------UGCUgCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 73648 | 0.75 | 0.58601 |
Target: 5'- -gAUGGGCGGGGGggUucgGGCGGCGGa- -3' miRNA: 3'- aaUACCCGUCCUCuuG---CUGCUGCUgc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 154390 | 0.75 | 0.56544 |
Target: 5'- --uUGGGgGGGGGcgcgaaggcgGGCGGCGGCGGCGg -3' miRNA: 3'- aauACCCgUCCUC----------UUGCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 52 | 0.75 | 0.56544 |
Target: 5'- --uUGGGgGGGGGcgcgaaggcgGGCGGCGGCGGCGg -3' miRNA: 3'- aauACCCgUCCUC----------UUGCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 58578 | 0.75 | 0.58601 |
Target: 5'- aUcgGGGCGGGGGAgacucgaccGCGGaGACGACGc -3' miRNA: 3'- aAuaCCCGUCCUCU---------UGCUgCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 36556 | 0.74 | 0.648302 |
Target: 5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3' miRNA: 3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 36598 | 0.74 | 0.648302 |
Target: 5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3' miRNA: 3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 28775 | 0.74 | 0.637904 |
Target: 5'- ---cGGaGgAGGAGGagGCGGCGGCGGCGg -3' miRNA: 3'- aauaCC-CgUCCUCU--UGCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 36535 | 0.74 | 0.648302 |
Target: 5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3' miRNA: 3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 44305 | 0.74 | 0.606717 |
Target: 5'- ---cGGGCGGGGGcguUGugGACGAUGg -3' miRNA: 3'- aauaCCCGUCCUCuu-GCugCUGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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