Results 41 - 60 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5522 | 5' | -53.5 | NC_001798.1 | + | 122233 | 0.66 | 0.96751 |
Target: 5'- ---cGGGUGGGAagcucuGGcCGGCGGCGACc -3' miRNA: 3'- aauaCCCGUCCU------CUuGCUGCUGCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 143707 | 0.66 | 0.96751 |
Target: 5'- ---cGGGacuuGGAGAGgGGCGACGGg- -3' miRNA: 3'- aauaCCCgu--CCUCUUgCUGCUGCUgc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 26400 | 0.66 | 0.96751 |
Target: 5'- ---cGGGCGcugcucGAGccCGACGGCGACGc -3' miRNA: 3'- aauaCCCGUc-----CUCuuGCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 81079 | 0.66 | 0.96996 |
Target: 5'- uUUGUGGcuaccGCGGGGGAcguucucGCGGCGAgcgccgcCGACGc -3' miRNA: 3'- -AAUACC-----CGUCCUCU-------UGCUGCU-------GCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 35837 | 0.66 | 0.970551 |
Target: 5'- ---aGGGCcGGAGAAUGgaaGGCGAgGg -3' miRNA: 3'- aauaCCCGuCCUCUUGCug-CUGCUgC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 111183 | 0.66 | 0.957067 |
Target: 5'- --uUGGGCGGGAGGAgGuCGAacaUGAgGa -3' miRNA: 3'- aauACCCGUCCUCUUgCuGCU---GCUgC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 73620 | 0.66 | 0.957067 |
Target: 5'- gUGUGGuuAGGGGGACGAacaGGCGGu- -3' miRNA: 3'- aAUACCcgUCCUCUUGCUg--CUGCUgc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 97548 | 0.67 | 0.939881 |
Target: 5'- -cGUGGcGCGGGGacgcccgcGAGCGAgGACGGgGa -3' miRNA: 3'- aaUACC-CGUCCU--------CUUGCUgCUGCUgC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 81406 | 0.67 | 0.940358 |
Target: 5'- aUGUGGGCcuggauccacggccuGGAGGAgcuggcgucCGACGACGcCGg -3' miRNA: 3'- aAUACCCGu--------------CCUCUU---------GCUGCUGCuGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 11156 | 0.67 | 0.944083 |
Target: 5'- ---gGGGgGGGGGAaauaaccACGAUGGgGGCGg -3' miRNA: 3'- aauaCCCgUCCUCU-------UGCUGCUgCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 23943 | 0.67 | 0.944538 |
Target: 5'- gUGUGGGCGccGAGcugGGCGACG-CGGCGc -3' miRNA: 3'- aAUACCCGUc-CUC---UUGCUGCuGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 27027 | 0.67 | 0.944538 |
Target: 5'- ---cGGGCGGGGGucgGGCGgGCGGCa -3' miRNA: 3'- aauaCCCGUCCUCuugCUGC-UGCUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 36279 | 0.67 | 0.944538 |
Target: 5'- -gGUGGGCGGcGGGGGgGGgugccgugggugUGGCGGCGg -3' miRNA: 3'- aaUACCCGUC-CUCUUgCU------------GCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 102039 | 0.67 | 0.944538 |
Target: 5'- --uUGGGCGGGGGucuccgugucuGCGugGGgGugGu -3' miRNA: 3'- aauACCCGUCCUCu----------UGCugCUgCugC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 144557 | 0.67 | 0.944538 |
Target: 5'- -cGUGGGgGGGcguucgaaAGGGCGAgGACGgGCGg -3' miRNA: 3'- aaUACCCgUCC--------UCUUGCUgCUGC-UGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 24320 | 0.67 | 0.944538 |
Target: 5'- ---gGGGCGcGAacccccGACGACGGCGGCGa -3' miRNA: 3'- aauaCCCGUcCUc-----UUGCUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 67704 | 0.67 | 0.948953 |
Target: 5'- ---cGGGCccguGGGAG-GCGGgGugGGCGg -3' miRNA: 3'- aauaCCCG----UCCUCuUGCUgCugCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 76662 | 0.67 | 0.948953 |
Target: 5'- ---aGGGCcauGGAGGcggccaaGAUGACGGCGg -3' miRNA: 3'- aauaCCCGu--CCUCUug-----CUGCUGCUGC- -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 4412 | 0.67 | 0.953128 |
Target: 5'- ---gGGGCGccGGGGGucGCGGCGACaGGCu -3' miRNA: 3'- aauaCCCGU--CCUCU--UGCUGCUG-CUGc -5' |
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5522 | 5' | -53.5 | NC_001798.1 | + | 145835 | 0.67 | 0.953128 |
Target: 5'- gUcgGGGUGGGAGugGugGugGGgGACa -3' miRNA: 3'- aAuaCCCGUCCUC--UugCugCUgCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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