miRNA display CGI


Results 41 - 60 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 5' -53.5 NC_001798.1 + 146099 0.71 0.785491
Target:  5'- ---cGGGCGGGcGAAggaaggggggguggUGGCGGCGGCGg -3'
miRNA:   3'- aauaCCCGUCCuCUU--------------GCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 148398 0.71 0.806571
Target:  5'- ---cGGGCAGGugugcGGGCGGgGugGGCGc -3'
miRNA:   3'- aauaCCCGUCCu----CUUGCUgCugCUGC- -5'
5522 5' -53.5 NC_001798.1 + 18026 0.7 0.824205
Target:  5'- ---cGGGCAGGGGGGCGGcCGAaaccaugGACa -3'
miRNA:   3'- aauaCCCGUCCUCUUGCU-GCUg------CUGc -5'
5522 5' -53.5 NC_001798.1 + 95365 0.7 0.831908
Target:  5'- ---gGGGCAucauugcGGAGGGCGG-GGCGGCGg -3'
miRNA:   3'- aauaCCCGU-------CCUCUUGCUgCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 4363 0.7 0.832755
Target:  5'- ----cGGCGGGGGGcGCGcCGGCGGCGg -3'
miRNA:   3'- aauacCCGUCCUCU-UGCuGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 149927 0.7 0.832755
Target:  5'- ---cGGaGgAGGAGGagGCGGCGGCGACc -3'
miRNA:   3'- aauaCC-CgUCCUCU--UGCUGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 86004 0.7 0.832755
Target:  5'- --cUGGcGCAGGGGggUgagccggaGACGugGGCGu -3'
miRNA:   3'- aauACC-CGUCCUCuuG--------CUGCugCUGC- -5'
5522 5' -53.5 NC_001798.1 + 33390 0.7 0.832755
Target:  5'- -gGUGGGCAGGAGuGgGAgGGCGcCu -3'
miRNA:   3'- aaUACCCGUCCUCuUgCUgCUGCuGc -5'
5522 5' -53.5 NC_001798.1 + 32904 0.7 0.832755
Target:  5'- ---gGGGCAGGGGGAgGugGGgGGgGg -3'
miRNA:   3'- aauaCCCGUCCUCUUgCugCUgCUgC- -5'
5522 5' -53.5 NC_001798.1 + 44431 0.7 0.841116
Target:  5'- ---aGGGCGucuuGGAGcACGGCGACGuCGu -3'
miRNA:   3'- aauaCCCGU----CCUCuUGCUGCUGCuGC- -5'
5522 5' -53.5 NC_001798.1 + 2507 0.7 0.841116
Target:  5'- ---gGGGCGcGGcGGccGCGGCGGCGGCGu -3'
miRNA:   3'- aauaCCCGU-CCuCU--UGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 79949 0.7 0.849282
Target:  5'- --cUGGGCuGGgcguccGGAGCGGCGGCGcCGc -3'
miRNA:   3'- aauACCCGuCC------UCUUGCUGCUGCuGC- -5'
5522 5' -53.5 NC_001798.1 + 3313 0.7 0.849282
Target:  5'- ----cGGCAacGGGGcGGCGGCGGCGGCGg -3'
miRNA:   3'- aauacCCGU--CCUC-UUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 22700 0.7 0.857244
Target:  5'- ---cGGaGCAGcGGAagaagaagaagACGACGACGACGa -3'
miRNA:   3'- aauaCC-CGUCcUCU-----------UGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 101982 0.7 0.857244
Target:  5'- ---cGGGgGGGcGAuguGCGGCGGCGGCa -3'
miRNA:   3'- aauaCCCgUCCuCU---UGCUGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 69495 0.69 0.86423
Target:  5'- -gAUGGGCGGGcgcaggacgcgccGGAGCGG-GGCGugGc -3'
miRNA:   3'- aaUACCCGUCC-------------UCUUGCUgCUGCugC- -5'
5522 5' -53.5 NC_001798.1 + 129304 0.69 0.864995
Target:  5'- ---cGGGCGcGGAGGAgGGCG-UGACGu -3'
miRNA:   3'- aauaCCCGU-CCUCUUgCUGCuGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 2686 0.69 0.864995
Target:  5'- ---cGGGCGcGGcGAGCGagucggccGCGGCGACGg -3'
miRNA:   3'- aauaCCCGU-CCuCUUGC--------UGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 97607 0.69 0.864995
Target:  5'- ---gGGGCcGGAGAGCuGgGGCGACa -3'
miRNA:   3'- aauaCCCGuCCUCUUGcUgCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 105192 0.69 0.864995
Target:  5'- ---gGcGGCGGGGcccgcGGugGGCGACGGCGc -3'
miRNA:   3'- aauaC-CCGUCCU-----CUugCUGCUGCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.