miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 5' -53.5 NC_001798.1 + 36598 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 36619 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 36514 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 12713 0.73 0.669048
Target:  5'- ---gGGGCGGcGGGGGCGugGuGCGGCGc -3'
miRNA:   3'- aauaCCCGUC-CUCUUGCugC-UGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 14989 0.73 0.678348
Target:  5'- --uUGGGCGGGGGGGCGAggcguguUGGgGGCGa -3'
miRNA:   3'- aauACCCGUCCUCUUGCU-------GCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 24519 0.73 0.67938
Target:  5'- ----cGGCcGGGGccGACGACGACGACGa -3'
miRNA:   3'- aauacCCGuCCUC--UUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 146313 0.73 0.67938
Target:  5'- ---cGGGCGGGAGGAUGGCGGagaGAg- -3'
miRNA:   3'- aauaCCCGUCCUCUUGCUGCUg--CUgc -5'
5522 5' -53.5 NC_001798.1 + 101835 0.73 0.689671
Target:  5'- ---cGcGGCGGGGGGAggcguggguccCGGCGGCGGCGg -3'
miRNA:   3'- aauaC-CCGUCCUCUU-----------GCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 10917 0.73 0.689671
Target:  5'- gUcgGGGCAgaucGGAGAcuaGCuGACGGCGGCGc -3'
miRNA:   3'- aAuaCCCGU----CCUCU---UG-CUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 4302 0.73 0.699913
Target:  5'- ---gGaGGC-GGAGGACGcCGACGACGa -3'
miRNA:   3'- aauaC-CCGuCCUCUUGCuGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 22285 0.73 0.710095
Target:  5'- -gAUGccgcGCGGGcGGAGCGGCGGCGGCGc -3'
miRNA:   3'- aaUACc---CGUCC-UCUUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 23524 0.72 0.730246
Target:  5'- ---cGGGCGGGAcccucggcgcGGACGACGAggaGGCGg -3'
miRNA:   3'- aauaCCCGUCCU----------CUUGCUGCUg--CUGC- -5'
5522 5' -53.5 NC_001798.1 + 15454 0.72 0.738213
Target:  5'- ---gGGGCGGGGGGucgcguggguaGACGugGGCGg -3'
miRNA:   3'- aauaCCCGUCCUCUug---------CUGCugCUGC- -5'
5522 5' -53.5 NC_001798.1 + 10280 0.72 0.740195
Target:  5'- ---aGGGUgcgucGGGGGGGCGACgggggGACGACGg -3'
miRNA:   3'- aauaCCCG-----UCCUCUUGCUG-----CUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 115022 0.72 0.750047
Target:  5'- -gAUGGGCAaggccgugcGGAGccugGACGACGugGGCc -3'
miRNA:   3'- aaUACCCGU---------CCUC----UUGCUGCugCUGc -5'
5522 5' -53.5 NC_001798.1 + 142834 0.71 0.77892
Target:  5'- ---aGGGUAGGGGGAaaagaaaGGgGACGGCGg -3'
miRNA:   3'- aauaCCCGUCCUCUUg------CUgCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 99618 0.71 0.77892
Target:  5'- ---aGuGGCAGGAGGugGACGA-GAUGc -3'
miRNA:   3'- aauaC-CCGUCCUCUugCUGCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 51056 0.71 0.77892
Target:  5'- ---cGGGCGGuGuuuAACGugGACGACGa -3'
miRNA:   3'- aauaCCCGUC-Cuc-UUGCugCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 69646 0.71 0.77892
Target:  5'- gUUGUGGG-GGGGGGugGugGAgGugGg -3'
miRNA:   3'- -AAUACCCgUCCUCUugCugCUgCugC- -5'
5522 5' -53.5 NC_001798.1 + 152044 0.71 0.77892
Target:  5'- ---aGGGUcGGGGGGCGGCGcACGGCc -3'
miRNA:   3'- aauaCCCGuCCUCUUGCUGC-UGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.