miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 5' -53.5 NC_001798.1 + 10280 0.72 0.740195
Target:  5'- ---aGGGUgcgucGGGGGGGCGACgggggGACGACGg -3'
miRNA:   3'- aauaCCCG-----UCCUCUUGCUG-----CUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 10917 0.73 0.689671
Target:  5'- gUcgGGGCAgaucGGAGAcuaGCuGACGGCGGCGc -3'
miRNA:   3'- aAuaCCCGU----CCUCU---UG-CUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 11156 0.67 0.944083
Target:  5'- ---gGGGgGGGGGAaauaaccACGAUGGgGGCGg -3'
miRNA:   3'- aauaCCCgUCCUCU-------UGCUGCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 11321 0.68 0.929831
Target:  5'- ----aGGCAuGGucGugGACGACGACGa -3'
miRNA:   3'- aauacCCGU-CCucUugCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 12713 0.73 0.669048
Target:  5'- ---gGGGCGGcGGGGGCGugGuGCGGCGc -3'
miRNA:   3'- aauaCCCGUC-CUCUUGCugC-UGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 14989 0.73 0.678348
Target:  5'- --uUGGGCGGGGGGGCGAggcguguUGGgGGCGa -3'
miRNA:   3'- aauACCCGUCCUCUUGCU-------GCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 15454 0.72 0.738213
Target:  5'- ---gGGGCGGGGGGucgcguggguaGACGugGGCGg -3'
miRNA:   3'- aauaCCCGUCCUCUug---------CUGCugCUGC- -5'
5522 5' -53.5 NC_001798.1 + 15577 0.69 0.886928
Target:  5'- ---cGcGGCGGG-GAGUGGCGACGACu -3'
miRNA:   3'- aauaC-CCGUCCuCUUGCUGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 18026 0.7 0.824205
Target:  5'- ---cGGGCAGGGGGGCGGcCGAaaccaugGACa -3'
miRNA:   3'- aauaCCCGUCCUCUUGCU-GCUg------CUGc -5'
5522 5' -53.5 NC_001798.1 + 21954 0.66 0.96751
Target:  5'- --uUGGGC-GGAGcGCGG-GAUGACGc -3'
miRNA:   3'- aauACCCGuCCUCuUGCUgCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 22199 0.79 0.36071
Target:  5'- ---aGGGCAGGGGAGCGagcccgcccGCGACGAgGg -3'
miRNA:   3'- aauaCCCGUCCUCUUGC---------UGCUGCUgC- -5'
5522 5' -53.5 NC_001798.1 + 22285 0.73 0.710095
Target:  5'- -gAUGccgcGCGGGcGGAGCGGCGGCGGCGc -3'
miRNA:   3'- aaUACc---CGUCC-UCUUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 22700 0.7 0.857244
Target:  5'- ---cGGaGCAGcGGAagaagaagaagACGACGACGACGa -3'
miRNA:   3'- aauaCC-CGUCcUCU-----------UGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 22903 0.81 0.293104
Target:  5'- -gGUGGGCcggAGGAGAACGAagacgaggcCGACGACGc -3'
miRNA:   3'- aaUACCCG---UCCUCUUGCU---------GCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 23161 0.87 0.124208
Target:  5'- aUUAUGGcG-AGGAGAACGACGACGACGa -3'
miRNA:   3'- -AAUACC-CgUCCUCUUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 23524 0.72 0.730246
Target:  5'- ---cGGGCGGGAcccucggcgcGGACGACGAggaGGCGg -3'
miRNA:   3'- aauaCCCGUCCU----------CUUGCUGCUg--CUGC- -5'
5522 5' -53.5 NC_001798.1 + 23943 0.67 0.944538
Target:  5'- gUGUGGGCGccGAGcugGGCGACG-CGGCGc -3'
miRNA:   3'- aAUACCCGUc-CUC---UUGCUGCuGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 24320 0.67 0.944538
Target:  5'- ---gGGGCGcGAacccccGACGACGGCGGCGa -3'
miRNA:   3'- aauaCCCGUcCUc-----UUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 24519 0.73 0.67938
Target:  5'- ----cGGCcGGGGccGACGACGACGACGa -3'
miRNA:   3'- aauacCCGuCCUC--UUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 26327 0.68 0.900396
Target:  5'- -cGUGGcGCuGGGGcGCGACGccgugcGCGGCGg -3'
miRNA:   3'- aaUACC-CGuCCUCuUGCUGC------UGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.