miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 5' -53.5 NC_001798.1 + 26400 0.66 0.96751
Target:  5'- ---cGGGCGcugcucGAGccCGACGGCGACGc -3'
miRNA:   3'- aauaCCCGUc-----CUCuuGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 26605 0.85 0.161356
Target:  5'- ---cGGaGCuGGAGGACGACGACGACGg -3'
miRNA:   3'- aauaCC-CGuCCUCUUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 27027 0.67 0.944538
Target:  5'- ---cGGGCGGGGGucgGGCGgGCGGCa -3'
miRNA:   3'- aauaCCCGUCCUCuugCUGC-UGCUGc -5'
5522 5' -53.5 NC_001798.1 + 28775 0.74 0.637904
Target:  5'- ---cGGaGgAGGAGGagGCGGCGGCGGCGg -3'
miRNA:   3'- aauaCC-CgUCCUCU--UGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 31360 0.68 0.900396
Target:  5'- ---cGcGGCGGGuGGGCGaagacgccGCGGCGGCGg -3'
miRNA:   3'- aauaC-CCGUCCuCUUGC--------UGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 32904 0.7 0.832755
Target:  5'- ---gGGGCAGGGGGAgGugGGgGGgGg -3'
miRNA:   3'- aauaCCCGUCCUCUUgCugCUgCUgC- -5'
5522 5' -53.5 NC_001798.1 + 33390 0.7 0.832755
Target:  5'- -gGUGGGCAGGAGuGgGAgGGCGcCu -3'
miRNA:   3'- aaUACCCGUCCUCuUgCUgCUGCuGc -5'
5522 5' -53.5 NC_001798.1 + 34604 0.77 0.495282
Target:  5'- -gGUGGgacGCGGGcaaAGGGCGGCGGCGGCGg -3'
miRNA:   3'- aaUACC---CGUCC---UCUUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 35430 0.68 0.929831
Target:  5'- -aAUGcGGCGGGAG-GCGugGGCcgcuGGCGc -3'
miRNA:   3'- aaUAC-CCGUCCUCuUGCugCUG----CUGC- -5'
5522 5' -53.5 NC_001798.1 + 35837 0.66 0.970551
Target:  5'- ---aGGGCcGGAGAAUGgaaGGCGAgGg -3'
miRNA:   3'- aauaCCCGuCCUCUUGCug-CUGCUgC- -5'
5522 5' -53.5 NC_001798.1 + 36095 0.69 0.879843
Target:  5'- -gGUGGGCGGGuGGugGGgGGgGGCc -3'
miRNA:   3'- aaUACCCGUCCuCUugCUgCUgCUGc -5'
5522 5' -53.5 NC_001798.1 + 36279 0.67 0.944538
Target:  5'- -gGUGGGCGGcGGGGGgGGgugccgugggugUGGCGGCGg -3'
miRNA:   3'- aaUACCCGUC-CUCUUgCU------------GCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 36514 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 36535 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 36556 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 36577 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 36598 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 36619 0.74 0.648302
Target:  5'- ---cGGGCGGGGGcGCG-CGGCGGCc -3'
miRNA:   3'- aauaCCCGUCCUCuUGCuGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 39604 0.68 0.906772
Target:  5'- gUUGUGGGCGuuucuGGAGAcGCGcCGGCGGgGu -3'
miRNA:   3'- -AAUACCCGU-----CCUCU-UGCuGCUGCUgC- -5'
5522 5' -53.5 NC_001798.1 + 42191 0.68 0.928238
Target:  5'- -cAUGGGCGGGgcgugaaaguGGAagcgccgcgggucgGCGugcGCGGCGACGa -3'
miRNA:   3'- aaUACCCGUCC----------UCU--------------UGC---UGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.