miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 5' -53.5 NC_001798.1 + 128535 0.77 0.466419
Target:  5'- ---cGGGCGGGuGAACGAgcCGACGGCc -3'
miRNA:   3'- aauaCCCGUCCuCUUGCU--GCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 122828 0.81 0.293104
Target:  5'- ---aGGGCGGucGGGGGCGGCGGCGGCGg -3'
miRNA:   3'- aauaCCCGUC--CUCUUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 122233 0.66 0.96751
Target:  5'- ---cGGGUGGGAagcucuGGcCGGCGGCGACc -3'
miRNA:   3'- aauaCCCGUCCU------CUuGCUGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 115022 0.72 0.750047
Target:  5'- -gAUGGGCAaggccgugcGGAGccugGACGACGugGGCc -3'
miRNA:   3'- aaUACCCGU---------CCUC----UUGCUGCugCUGc -5'
5522 5' -53.5 NC_001798.1 + 111183 0.66 0.957067
Target:  5'- --uUGGGCGGGAGGAgGuCGAacaUGAgGa -3'
miRNA:   3'- aauACCCGUCCUCUUgCuGCU---GCUgC- -5'
5522 5' -53.5 NC_001798.1 + 105613 0.78 0.420348
Target:  5'- ---gGcGGCGGGcGGGCGACGACGGCGc -3'
miRNA:   3'- aauaC-CCGUCCuCUUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 105192 0.69 0.864995
Target:  5'- ---gGcGGCGGGGcccgcGGugGGCGACGGCGc -3'
miRNA:   3'- aauaC-CCGUCCU-----CUugCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 102473 0.76 0.534963
Target:  5'- -gGUGGGCGGGAGGagGCGgguaguGCGGgGACGg -3'
miRNA:   3'- aaUACCCGUCCUCU--UGC------UGCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 102039 0.67 0.944538
Target:  5'- --uUGGGCGGGGGucuccgugucuGCGugGGgGugGu -3'
miRNA:   3'- aauACCCGUCCUCu----------UGCugCUgCugC- -5'
5522 5' -53.5 NC_001798.1 + 101982 0.7 0.857244
Target:  5'- ---cGGGgGGGcGAuguGCGGCGGCGGCa -3'
miRNA:   3'- aauaCCCgUCCuCU---UGCUGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 101835 0.73 0.689671
Target:  5'- ---cGcGGCGGGGGGAggcguggguccCGGCGGCGGCGg -3'
miRNA:   3'- aauaC-CCGUCCUCUU-----------GCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 100991 0.68 0.924435
Target:  5'- -cGUGGGCgGGGAGGGgGAgGAaGGCGc -3'
miRNA:   3'- aaUACCCG-UCCUCUUgCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 99618 0.71 0.77892
Target:  5'- ---aGuGGCAGGAGGugGACGA-GAUGc -3'
miRNA:   3'- aauaC-CCGUCCUCUugCUGCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 98496 0.68 0.918793
Target:  5'- ---cGGGCGGcGGGAGCGACG-CGcCc -3'
miRNA:   3'- aauaCCCGUC-CUCUUGCUGCuGCuGc -5'
5522 5' -53.5 NC_001798.1 + 97607 0.69 0.864995
Target:  5'- ---gGGGCcGGAGAGCuGgGGCGACa -3'
miRNA:   3'- aauaCCCGuCCUCUUGcUgCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 97548 0.67 0.939881
Target:  5'- -cGUGGcGCGGGGacgcccgcGAGCGAgGACGGgGa -3'
miRNA:   3'- aaUACC-CGUCCU--------CUUGCUgCUGCUgC- -5'
5522 5' -53.5 NC_001798.1 + 96034 0.69 0.886928
Target:  5'- ---gGGGCGGGcGGGCGgGCGACGGg- -3'
miRNA:   3'- aauaCCCGUCCuCUUGC-UGCUGCUgc -5'
5522 5' -53.5 NC_001798.1 + 95365 0.7 0.831908
Target:  5'- ---gGGGCAucauugcGGAGGGCGG-GGCGGCGg -3'
miRNA:   3'- aauaCCCGU-------CCUCUUGCUgCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 91808 0.67 0.939881
Target:  5'- ---gGGGCGuGGGGAcCGugGGCGGgGc -3'
miRNA:   3'- aauaCCCGU-CCUCUuGCugCUGCUgC- -5'
5522 5' -53.5 NC_001798.1 + 88060 0.69 0.879843
Target:  5'- ---gGGGCGGGcucguccccuGGGGCGGCGGCGuCu -3'
miRNA:   3'- aauaCCCGUCC----------UCUUGCUGCUGCuGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.