miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 5' -53.5 NC_001798.1 + 154390 0.75 0.56544
Target:  5'- --uUGGGgGGGGGcgcgaaggcgGGCGGCGGCGGCGg -3'
miRNA:   3'- aauACCCgUCCUC----------UUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 153804 0.69 0.87253
Target:  5'- ---gGcGGCGGGGGGcagGCGGCGGCaGGCGc -3'
miRNA:   3'- aauaC-CCGUCCUCU---UGCUGCUG-CUGC- -5'
5522 5' -53.5 NC_001798.1 + 153073 0.77 0.466419
Target:  5'- ---gGGGCGGGcGGAGCGGCGggGCGGCGc -3'
miRNA:   3'- aauaCCCGUCC-UCUUGCUGC--UGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 152044 0.71 0.77892
Target:  5'- ---aGGGUcGGGGGGCGGCGcACGGCc -3'
miRNA:   3'- aauaCCCGuCCUCUUGCUGC-UGCUGc -5'
5522 5' -53.5 NC_001798.1 + 151166 0.69 0.864995
Target:  5'- ---cGGGCcacgGGGGGGugGGCGACagGGCGc -3'
miRNA:   3'- aauaCCCG----UCCUCUugCUGCUG--CUGC- -5'
5522 5' -53.5 NC_001798.1 + 149927 0.7 0.832755
Target:  5'- ---cGGaGgAGGAGGagGCGGCGGCGACc -3'
miRNA:   3'- aauaCC-CgUCCUCU--UGCUGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 148398 0.71 0.806571
Target:  5'- ---cGGGCAGGugugcGGGCGGgGugGGCGc -3'
miRNA:   3'- aauaCCCGUCCu----CUUGCUgCugCUGC- -5'
5522 5' -53.5 NC_001798.1 + 148047 0.67 0.939881
Target:  5'- ---cGGGCGGGGGggUGGugguaGugGugGc -3'
miRNA:   3'- aauaCCCGUCCUCuuGCUg----CugCugC- -5'
5522 5' -53.5 NC_001798.1 + 146313 0.73 0.67938
Target:  5'- ---cGGGCGGGAGGAUGGCGGagaGAg- -3'
miRNA:   3'- aauaCCCGUCCUCUUGCUGCUg--CUgc -5'
5522 5' -53.5 NC_001798.1 + 146099 0.71 0.785491
Target:  5'- ---cGGGCGGGcGAAggaaggggggguggUGGCGGCGGCGg -3'
miRNA:   3'- aauaCCCGUCCuCUU--------------GCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 145835 0.67 0.953128
Target:  5'- gUcgGGGUGGGAGugGugGugGGgGACa -3'
miRNA:   3'- aAuaCCCGUCCUC--UugCugCUgCUGc -5'
5522 5' -53.5 NC_001798.1 + 145806 0.68 0.929831
Target:  5'- ---cGGGCGGcAGAaacGCGggcGCGGCGGCGg -3'
miRNA:   3'- aauaCCCGUCcUCU---UGC---UGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 144557 0.67 0.944538
Target:  5'- -cGUGGGgGGGcguucgaaAGGGCGAgGACGgGCGg -3'
miRNA:   3'- aaUACCCgUCC--------UCUUGCUgCUGC-UGC- -5'
5522 5' -53.5 NC_001798.1 + 143707 0.66 0.96751
Target:  5'- ---cGGGacuuGGAGAGgGGCGACGGg- -3'
miRNA:   3'- aauaCCCgu--CCUCUUgCUGCUGCUgc -5'
5522 5' -53.5 NC_001798.1 + 142834 0.71 0.77892
Target:  5'- ---aGGGUAGGGGGAaaagaaaGGgGACGGCGg -3'
miRNA:   3'- aauaCCCGUCCUCUUg------CUgCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 141556 0.68 0.898436
Target:  5'- ---cGGGUguucgcguucgcggAGGAGcuGCGGCGGCGGCa -3'
miRNA:   3'- aauaCCCG--------------UCCUCu-UGCUGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 141211 0.68 0.929831
Target:  5'- ---cGGGaCGGGGGcccgGACGAcuucccCGACGACGa -3'
miRNA:   3'- aauaCCC-GUCCUC----UUGCU------GCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 130681 0.69 0.891749
Target:  5'- ---aGGGCGGcgaucguguucaacGAGAccGCGGCGGCGGCc -3'
miRNA:   3'- aauaCCCGUC--------------CUCU--UGCUGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 129304 0.69 0.864995
Target:  5'- ---cGGGCGcGGAGGAgGGCG-UGACGu -3'
miRNA:   3'- aauaCCCGU-CCUCUUgCUGCuGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 128583 0.68 0.924435
Target:  5'- -cGUGGGCcgcgcGGAcgcGGGCGucaACGACGACGc -3'
miRNA:   3'- aaUACCCGu----CCU---CUUGC---UGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.