miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5522 5' -53.5 NC_001798.1 + 11321 0.68 0.929831
Target:  5'- ----aGGCAuGGucGugGACGACGACGa -3'
miRNA:   3'- aauacCCGU-CCucUugCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 35430 0.68 0.929831
Target:  5'- -aAUGcGGCGGGAG-GCGugGGCcgcuGGCGc -3'
miRNA:   3'- aaUAC-CCGUCCUCuUGCugCUG----CUGC- -5'
5522 5' -53.5 NC_001798.1 + 141211 0.68 0.929831
Target:  5'- ---cGGGaCGGGGGcccgGACGAcuucccCGACGACGa -3'
miRNA:   3'- aauaCCC-GUCCUC----UUGCU------GCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 145806 0.68 0.929831
Target:  5'- ---cGGGCGGcAGAaacGCGggcGCGGCGGCGg -3'
miRNA:   3'- aauaCCCGUCcUCU---UGC---UGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 42191 0.68 0.928238
Target:  5'- -cAUGGGCGGGgcgugaaaguGGAagcgccgcgggucgGCGugcGCGGCGACGa -3'
miRNA:   3'- aaUACCCGUCC----------UCU--------------UGC---UGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 100991 0.68 0.924435
Target:  5'- -cGUGGGCgGGGAGGGgGAgGAaGGCGc -3'
miRNA:   3'- aaUACCCG-UCCUCUUgCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 128583 0.68 0.924435
Target:  5'- -cGUGGGCcgcgcGGAcgcGGGCGucaACGACGACGc -3'
miRNA:   3'- aaUACCCGu----CCU---CUUGC---UGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 98496 0.68 0.918793
Target:  5'- ---cGGGCGGcGGGAGCGACG-CGcCc -3'
miRNA:   3'- aauaCCCGUC-CUCUUGCUGCuGCuGc -5'
5522 5' -53.5 NC_001798.1 + 6585 0.68 0.918793
Target:  5'- ---cGGGcCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 6543 0.68 0.918793
Target:  5'- ---cGGGcCGGGGGGACGGgGG-GACGg -3'
miRNA:   3'- aauaCCC-GUCCUCUUGCUgCUgCUGC- -5'
5522 5' -53.5 NC_001798.1 + 55893 0.68 0.912905
Target:  5'- ---gGGGUAcGAGAACcaacGCGGCGACGa -3'
miRNA:   3'- aauaCCCGUcCUCUUGc---UGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 50397 0.68 0.912905
Target:  5'- ---gGGGUAGGAuguGCGACcgGGCGGCGc -3'
miRNA:   3'- aauaCCCGUCCUcu-UGCUG--CUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 2750 0.68 0.906772
Target:  5'- --cUGGaagaGCAGGuccGCGGCGGCGGCGg -3'
miRNA:   3'- aauACC----CGUCCucuUGCUGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 39604 0.68 0.906772
Target:  5'- gUUGUGGGCGuuucuGGAGAcGCGcCGGCGGgGu -3'
miRNA:   3'- -AAUACCCGU-----CCUCU-UGCuGCUGCUgC- -5'
5522 5' -53.5 NC_001798.1 + 31360 0.68 0.900396
Target:  5'- ---cGcGGCGGGuGGGCGaagacgccGCGGCGGCGg -3'
miRNA:   3'- aauaC-CCGUCCuCUUGC--------UGCUGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 26327 0.68 0.900396
Target:  5'- -cGUGGcGCuGGGGcGCGACGccgugcGCGGCGg -3'
miRNA:   3'- aaUACC-CGuCCUCuUGCUGC------UGCUGC- -5'
5522 5' -53.5 NC_001798.1 + 141556 0.68 0.898436
Target:  5'- ---cGGGUguucgcguucgcggAGGAGcuGCGGCGGCGGCa -3'
miRNA:   3'- aauaCCCG--------------UCCUCu-UGCUGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 130681 0.69 0.891749
Target:  5'- ---aGGGCGGcgaucguguucaacGAGAccGCGGCGGCGGCc -3'
miRNA:   3'- aauaCCCGUC--------------CUCU--UGCUGCUGCUGc -5'
5522 5' -53.5 NC_001798.1 + 96034 0.69 0.886928
Target:  5'- ---gGGGCGGGcGGGCGgGCGACGGg- -3'
miRNA:   3'- aauaCCCGUCCuCUUGC-UGCUGCUgc -5'
5522 5' -53.5 NC_001798.1 + 63580 0.69 0.886928
Target:  5'- -gGUGcGCAGGuacGCGAUGGCGGCGa -3'
miRNA:   3'- aaUACcCGUCCucuUGCUGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.