Results 41 - 60 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5534 | 3' | -51 | NC_001806.1 | + | 34928 | 0.69 | 0.965139 |
Target: 5'- aGGGAGAGGGGGGgagagGgGAgaGGGGGg -3' miRNA: 3'- -CCCUCUUUCCCCaga--CgUUggUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 62244 | 0.69 | 0.961677 |
Target: 5'- cGGGGGAGAGGG--CUGgGGCCGcGGa -3' miRNA: 3'- -CCCUCUUUCCCcaGACgUUGGUuUCc -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 151236 | 0.69 | 0.957983 |
Target: 5'- gGGGuGGGAGGGGUCaGCcccGCCccccGGGc -3' miRNA: 3'- -CCCuCUUUCCCCAGaCGu--UGGuu--UCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 65635 | 0.69 | 0.954053 |
Target: 5'- uGGGcGAGAGGGGcCccgGCGGCCucccccuGGGu -3' miRNA: 3'- -CCCuCUUUCCCCaGa--CGUUGGuu-----UCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 128899 | 0.68 | 0.979198 |
Target: 5'- cGGGAGAuccucuGGGGGcCggGCGucCCAuuGGg -3' miRNA: 3'- -CCCUCUu-----UCCCCaGa-CGUu-GGUuuCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 149882 | 0.68 | 0.979198 |
Target: 5'- cGGAGGGucccuGGGGGUC-GCAACguAGGcGg -3' miRNA: 3'- cCCUCUU-----UCCCCAGaCGUUGguUUC-C- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 31914 | 0.68 | 0.980547 |
Target: 5'- aGGGcGggGGGGGUUaacuacacauaggGCAA-CAAAGGa -3' miRNA: 3'- -CCCuCuuUCCCCAGa------------CGUUgGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 25970 | 0.68 | 0.98141 |
Target: 5'- gGGGAGGAgcGGGGGga-GgAGCgGGGGGa -3' miRNA: 3'- -CCCUCUU--UCCCCagaCgUUGgUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 26006 | 0.68 | 0.98141 |
Target: 5'- gGGGAGGAgcGGGGGga-GgAGCgGGGGGa -3' miRNA: 3'- -CCCUCUU--UCCCCagaCgUUGgUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 26042 | 0.68 | 0.98141 |
Target: 5'- gGGGAGGAgcGGGGGga-GgAGCgGGGGGa -3' miRNA: 3'- -CCCUCUU--UCCCCagaCgUUGgUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 26078 | 0.68 | 0.98141 |
Target: 5'- gGGGAGGAgcGGGGGga-GgAGCgGGGGGa -3' miRNA: 3'- -CCCUCUU--UCCCCagaCgUUGgUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 95296 | 0.68 | 0.979198 |
Target: 5'- uGGGGGcgGGGGGcgCgGCGGacgcgcCCAAGGGc -3' miRNA: 3'- -CCCUCuuUCCCCa-GaCGUU------GGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 28863 | 0.68 | 0.978966 |
Target: 5'- gGGGGGAGAGGGGgaacUCgugGguGCUGAuugacgcGGGa -3' miRNA: 3'- -CCCUCUUUCCCC----AGa--CguUGGUU-------UCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 4418 | 0.68 | 0.976796 |
Target: 5'- cGGAGAGGGGGGgugGCccGGgCGGGGGc -3' miRNA: 3'- cCCUCUUUCCCCagaCG--UUgGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 34362 | 0.68 | 0.976796 |
Target: 5'- cGGGGGAccGGGG-CUGgGuauCCcGAGGu -3' miRNA: 3'- -CCCUCUuuCCCCaGACgUu--GGuUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 43714 | 0.68 | 0.974197 |
Target: 5'- cGGGGGAAcccggucggGGGGGaUUgggGUGACCGAGGc -3' miRNA: 3'- -CCCUCUU---------UCCCC-AGa--CGUUGGUUUCc -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 34996 | 0.68 | 0.971393 |
Target: 5'- gGGGAGAGGGGGGgagagGgGAgaGGGGGg -3' miRNA: 3'- -CCCUCUUUCCCCaga--CgUUggUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 34962 | 0.68 | 0.971393 |
Target: 5'- gGGGAGAGGGGGGgagagGgGAgaGGGGGg -3' miRNA: 3'- -CCCUCUUUCCCCaga--CgUUggUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 34895 | 0.68 | 0.971393 |
Target: 5'- gGGGAGAGGGGGGgagagGgGAgaGGGGGg -3' miRNA: 3'- -CCCUCUUUCCCCaga--CgUUggUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 26114 | 0.68 | 0.98141 |
Target: 5'- gGGGAGGAgcGGGGGga-GgAGCgGGGGGa -3' miRNA: 3'- -CCCUCUU--UCCCCagaCgUUGgUUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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