miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5534 3' -51 NC_001806.1 + 32200 0.74 0.778251
Target:  5'- cGGGGGAcguGGGGUUgGUGugCAAAGGc -3'
miRNA:   3'- -CCCUCUuu-CCCCAGaCGUugGUUUCC- -5'
5534 3' -51 NC_001806.1 + 32826 0.68 0.971393
Target:  5'- gGGGAGGAAGGGaGggaggagGguACUggGGGu -3'
miRNA:   3'- -CCCUCUUUCCC-Caga----CguUGGuuUCC- -5'
5534 3' -51 NC_001806.1 + 34290 0.7 0.93072
Target:  5'- gGGGcGGGAuGGGGUUUaGCGGCgGGGGGc -3'
miRNA:   3'- -CCC-UCUUuCCCCAGA-CGUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 34362 0.68 0.976796
Target:  5'- cGGGGGAccGGGG-CUGgGuauCCcGAGGu -3'
miRNA:   3'- -CCCUCUuuCCCCaGACgUu--GGuUUCC- -5'
5534 3' -51 NC_001806.1 + 34488 0.71 0.913705
Target:  5'- gGGGAGAcGGGGGgaaaGCAAggacacggcCCGGGGGg -3'
miRNA:   3'- -CCCUCUuUCCCCaga-CGUU---------GGUUUCC- -5'
5534 3' -51 NC_001806.1 + 34750 0.66 0.993331
Target:  5'- aGGGGAucaAAGGGGg--GCAaaGCCGgcGGg -3'
miRNA:   3'- cCCUCU---UUCCCCagaCGU--UGGUuuCC- -5'
5534 3' -51 NC_001806.1 + 34788 0.74 0.768625
Target:  5'- gGGGGGggGGGGGgggGCGggaaACCAAguAGGc -3'
miRNA:   3'- -CCCUCuuUCCCCagaCGU----UGGUU--UCC- -5'
5534 3' -51 NC_001806.1 + 34895 0.68 0.971393
Target:  5'- gGGGAGAGGGGGGgagagGgGAgaGGGGGg -3'
miRNA:   3'- -CCCUCUUUCCCCaga--CgUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 34928 0.69 0.965139
Target:  5'- aGGGAGAGGGGGGgagagGgGAgaGGGGGg -3'
miRNA:   3'- -CCCUCUUUCCCCaga--CgUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 34962 0.68 0.971393
Target:  5'- gGGGAGAGGGGGGgagagGgGAgaGGGGGg -3'
miRNA:   3'- -CCCUCUUUCCCCaga--CgUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 34996 0.68 0.971393
Target:  5'- gGGGAGAGGGGGGgagagGgGAgaGGGGGg -3'
miRNA:   3'- -CCCUCUUUCCCCaga--CgUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 35047 0.71 0.913705
Target:  5'- gGGGAGAGGGGGGgagaggGgAGCCAGu-- -3'
miRNA:   3'- -CCCUCUUUCCCCaga---CgUUGGUUucc -5'
5534 3' -51 NC_001806.1 + 36709 0.7 0.940801
Target:  5'- uGGuGAGGGGGGUCgcugucauagUGCAAaaGGGGGg -3'
miRNA:   3'- cCCuCUUUCCCCAG----------ACGUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 37793 0.72 0.88037
Target:  5'- cGGGGcgcGGGGGUCcGCGGgCGGGGGg -3'
miRNA:   3'- cCCUCuu-UCCCCAGaCGUUgGUUUCC- -5'
5534 3' -51 NC_001806.1 + 43714 0.68 0.974197
Target:  5'- cGGGGGAAcccggucggGGGGGaUUgggGUGACCGAGGc -3'
miRNA:   3'- -CCCUCUU---------UCCCC-AGa--CGUUGGUUUCc -5'
5534 3' -51 NC_001806.1 + 44744 0.7 0.949881
Target:  5'- uGGAGggGGGGGcgccagUUGCGggaacuGCCGcAGGg -3'
miRNA:   3'- cCCUCuuUCCCCa-----GACGU------UGGUuUCC- -5'
5534 3' -51 NC_001806.1 + 51094 0.66 0.992319
Target:  5'- uGGGAGAcGAGGGGgccgccgccCUGCGGgCGcacgugucGGGGa -3'
miRNA:   3'- -CCCUCU-UUCCCCa--------GACGUUgGU--------UUCC- -5'
5534 3' -51 NC_001806.1 + 56687 0.67 0.988535
Target:  5'- gGGGGGAcGGGGGcCcgGgAACCccGGGu -3'
miRNA:   3'- -CCCUCUuUCCCCaGa-CgUUGGuuUCC- -5'
5534 3' -51 NC_001806.1 + 57810 0.66 0.991188
Target:  5'- aGGGGGAcuGGa-UCUGCGGgCGGGGGu -3'
miRNA:   3'- -CCCUCUuuCCccAGACGUUgGUUUCC- -5'
5534 3' -51 NC_001806.1 + 59053 0.7 0.935887
Target:  5'- gGGGAGgcGGGGGcCa-CAccGCCAGGGGa -3'
miRNA:   3'- -CCCUCuuUCCCCaGacGU--UGGUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.