miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5534 3' -51 NC_001806.1 + 25199 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 25233 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 25267 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 25301 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 25335 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 25369 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 25531 0.67 0.986994
Target:  5'- gGGGAGGGcuGGGGccggggagggCUGgGGCCGggGAGGg -3'
miRNA:   3'- -CCCUCUUu-CCCCa---------GACgUUGGU--UUCC- -5'
5534 3' -51 NC_001806.1 + 25579 0.67 0.986994
Target:  5'- gGGGAGGGcuGGGGccggggagggCUGgGGCCGggGAGGg -3'
miRNA:   3'- -CCCUCUUu-CCCCa---------GACgUUGGU--UUCC- -5'
5534 3' -51 NC_001806.1 + 25970 0.68 0.98141
Target:  5'- gGGGAGGAgcGGGGGga-GgAGCgGGGGGa -3'
miRNA:   3'- -CCCUCUU--UCCCCagaCgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 26006 0.68 0.98141
Target:  5'- gGGGAGGAgcGGGGGga-GgAGCgGGGGGa -3'
miRNA:   3'- -CCCUCUU--UCCCCagaCgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 26042 0.68 0.98141
Target:  5'- gGGGAGGAgcGGGGGga-GgAGCgGGGGGa -3'
miRNA:   3'- -CCCUCUU--UCCCCagaCgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 26078 0.68 0.98141
Target:  5'- gGGGAGGAgcGGGGGga-GgAGCgGGGGGa -3'
miRNA:   3'- -CCCUCUU--UCCCCagaCgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 26114 0.68 0.98141
Target:  5'- gGGGAGGAgcGGGGGga-GgAGCgGGGGGa -3'
miRNA:   3'- -CCCUCUU--UCCCCagaCgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 26162 0.72 0.872985
Target:  5'- gGGGAGGAgcGGGGGgaggaGCGGCCAGAc- -3'
miRNA:   3'- -CCCUCUU--UCCCCaga--CGUUGGUUUcc -5'
5534 3' -51 NC_001806.1 + 28741 0.79 0.541547
Target:  5'- cGGGAGAagagggaagaaGAGGGGUCgGgAuCCAAAGGa -3'
miRNA:   3'- -CCCUCU-----------UUCCCCAGaCgUuGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 28863 0.68 0.978966
Target:  5'- gGGGGGAGAGGGGgaacUCgugGguGCUGAuugacgcGGGa -3'
miRNA:   3'- -CCCUCUUUCCCC----AGa--CguUGGUU-------UCC- -5'
5534 3' -51 NC_001806.1 + 29995 0.7 0.951158
Target:  5'- gGGGGGGuuGGGGUUgggguugggguugUugaagcggaggcgggGCGGCCGAGGGg -3'
miRNA:   3'- -CCCUCUuuCCCCAG-------------A---------------CGUUGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 30636 0.66 0.995036
Target:  5'- aGGGccGGGGGGG-C-GCGGCCAGGGu -3'
miRNA:   3'- -CCCucUUUCCCCaGaCGUUGGUUUCc -5'
5534 3' -51 NC_001806.1 + 31370 0.77 0.645941
Target:  5'- gGGGAGggGGGGGUCggGC-GCUggGuGGu -3'
miRNA:   3'- -CCCUCuuUCCCCAGa-CGuUGGuuU-CC- -5'
5534 3' -51 NC_001806.1 + 31914 0.68 0.980547
Target:  5'- aGGGcGggGGGGGUUaacuacacauaggGCAA-CAAAGGa -3'
miRNA:   3'- -CCCuCuuUCCCCAGa------------CGUUgGUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.